View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_57 (Length: 384)
Name: NF1404_high_57
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_57 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 87 - 334
Target Start/End: Complemental strand, 35477724 - 35477483
Alignment:
| Q |
87 |
ggtgtgcatgctcagttctactcactaatcacatgttggtatttttcctctcatatatgataatatggtttccttttcttaatatggtttcatatttaat |
186 |
Q |
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| T |
35477724 |
ggtgagcatgctcagttctactcactaatcagatgttggtatttttcctctcatatatg---atatggtttcctttttttaatatggtttcatatttaat |
35477628 |
T |
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| Q |
187 |
aaacaaaacaacnnnnnnngttgacaaaaacagtgttttctttgtcgaaaacaatgtaaattatttaccatgaaaaagagttcatggtaattatatattt |
286 |
Q |
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| T |
35477627 |
aaacaaaacaactttttttgttgacaaaaacagtgttttctttgtcgaaaacaatgt---tttcttaaaatgaaaaagagttcatggtaattatatattt |
35477531 |
T |
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| Q |
287 |
gatatgcctttaatcctcttatgatatgcctttaatcctattattgtc |
334 |
Q |
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| T |
35477530 |
gatatgcctttaatcctcttatgatatgcctttaatcctattattgtc |
35477483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 35478502 - 35478437
Alignment:
| Q |
30 |
aatatttgacattttaaacaaacaagaatagagttacaccaacataggaggtgaaccggtgtgcat |
95 |
Q |
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| T |
35478502 |
aatatttgacattttaaacaaataagaatagagttacaccaacataggaggtgaaccggtgagcat |
35478437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 334 - 380
Target Start/End: Complemental strand, 35477454 - 35477408
Alignment:
| Q |
334 |
caaaggaaaataaatttgaggaccgatataatgcccctatgctactc |
380 |
Q |
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| T |
35477454 |
caaaggaaaagaaatttgaggaccgatataatgcccctatgccactc |
35477408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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