View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_67 (Length: 366)
Name: NF1404_high_67
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_67 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 102 - 359
Target Start/End: Original strand, 41563240 - 41563498
Alignment:
| Q |
102 |
aaacaacaagtgtacaaactagacttttgacatttcaaactcttatgccaaacttctatcataatcttgcataggtaggcgcttacatcatattcatatg |
201 |
Q |
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| T |
41563240 |
aaacaacaagtgtacaaactagacttttgacatttaaaactcttatgccaaacttctatcataatcttgcataggtaggcgcttacatcatattcatatg |
41563339 |
T |
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| Q |
202 |
aataaataaataattaatattgttctaaagtaaataagtgcattatagaaatcttcattcaatcattcattcc-aaaaaataaaatggagtctcaagcac |
300 |
Q |
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| T |
41563340 |
aataaataaataattaatattgttctaaagtaaataagtgcattatagaaatcttcattcaatcattcattccaaaaaaataaaatggagtctcaagcac |
41563439 |
T |
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| Q |
301 |
ctcaacttcactttgtgttatttctacttatgtccccaggacacatgcttcctatgata |
359 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
41563440 |
ctcaacttcactttgtgttatttccacttatgtccccaggacacatgcttcccatgata |
41563498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 41563105 - 41563206
Alignment:
| Q |
2 |
ataagtctttaatgatgatgtcagatccacttcaaatattattttgataaaatcttgaaattttggatgaccaatgtaactatttactcaatgattgccc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41563105 |
ataagtctttaatgatgatgtcagatccacttcaaatattattttgataaaatcttgaaattttggatgaccaatgtaactatttactcaatgattgccc |
41563204 |
T |
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| Q |
102 |
aa |
103 |
Q |
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|| |
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| T |
41563205 |
aa |
41563206 |
T |
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