View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_70 (Length: 358)
Name: NF1404_high_70
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_70 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 46076248 - 46075993
Alignment:
| Q |
5 |
tctcgaataatatgggactttttggtgtaccaaaacaatatcatataaccatttacataatttgattcaccacttcaaatattaattatgagatatgcta |
104 |
Q |
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| T |
46076248 |
tctcaaataatgtgggactttctgatgtaccgaaacaatatcatataaccatttacataatttgattcaccagttcaaatattaattatgagatatgcta |
46076149 |
T |
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| Q |
105 |
tttgttacgaatagtaacgaacaaatgtcattaaccaatcccttcttgtgcacgcccgaagcagatcagggggttctctagcaatgtctctaatgggatc |
204 |
Q |
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| T |
46076148 |
tatgttacgaatagtaacgaacaaatgtcattaaccaatcccttcttgtgcacgcccgaagcagatcagggggttctctagcaatgtctctaatgggatc |
46076049 |
T |
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| Q |
205 |
agcatgtgcagataacacatagttcgcatggggtggtgttaaatctggctttgaggtg |
262 |
Q |
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| T |
46076048 |
agcatgtgcagataacac--agttcgcatggggtggtgttaaatctggctttgaggtg |
46075993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 46064332 - 46064074
Alignment:
| Q |
21 |
actttttggtgtaccaaaacaatatcatataaccatttacataatttgattcaccacttcaaa-tattaattatgagatatgctatttgttacgaata-- |
117 |
Q |
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| T |
46064332 |
actttttggtgtaccgaaaaaatatcataaaaccatttacataatttgattcaccagtttgaagtattaattatgagatatgctttatgttatgaatatg |
46064233 |
T |
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| Q |
118 |
-------------gtaacgaacaaatgtcattaaccaatcccttcttgtgcacgcccgaagcag-atcagggggttctctagcaatgtctctaatgggat |
203 |
Q |
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| T |
46064232 |
catgacaccaatagtaacgaacaaatgtcattcaccaatcccttcctgtgcacatccgaagcagcatcagggggttttctagcaatgtttccaatggaat |
46064133 |
T |
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| Q |
204 |
cagcatgtgcagataacacatagttcgcatggggtggtgttaaatctggctttgaggtg |
262 |
Q |
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| T |
46064132 |
cagcatgtgcagctaacacatagttcgcagagggtggtcttaaatctggctttgaggtg |
46064074 |
T |
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