View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_78 (Length: 336)
Name: NF1404_high_78
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_78 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 8002638 - 8002314
Alignment:
| Q |
1 |
tgataaaggtgtaaagctaatgcaggtcgataccaactcctataaatcacgttttataaattctactaattatgtttctttattaggtttatgatttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8002638 |
tgataaaggtgtaaagctaatgcaggtcgataccaactcctataaatcacgttttataaattctactaattatgtttctttattaggtttatgatttgaa |
8002539 |
T |
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| Q |
101 |
aatatgtctgatattcttgcttttcctaactcaaaaataagtaaagatgctcaaattctgatcagatttatattctttaaaaggttttgttgttgttgta |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8002538 |
aatatttctgatattcttgcttttcctaactcaaaaataagtaaagatgctcaaattctgatcagatttatattctttagaaggttttgttgttgttgta |
8002439 |
T |
|
| Q |
201 |
gaaggttggtgggtaaaattgactgaattaaacttgtgcgacagtgctaagctctgaattgctagatattcatgtcgcatttgtaaattatctttgtgta |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8002438 |
gaaggttggtaggtaaaattgactgaattaaacttgtgcgactgtgctaagctctgaattgctagatattcatgtcgcatttgtaaattatctttgagta |
8002339 |
T |
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| Q |
301 |
tatgggtttggatcgctttatctgt |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
8002338 |
tatgggtttggatcgctttatctgt |
8002314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 49774566 - 49774746
Alignment:
| Q |
1 |
tgataaaggtgtaaagctaatgcaggtcgataccaactcctataaatc----acgttttataaattctactaattatgtttctttattaggtttatgatt |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
49774566 |
tgataaaggtgtaaagctaatgcaggtcgataccaactcctataaatcttaaacgttttataaattctactggttatgtttctttattaggtttatgatt |
49774665 |
T |
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| Q |
97 |
tgaaaatatgtctgatattcttgcttttcctaactcaaaaataagtaaagatgctcaaattctgatcagatttatattctt |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
49774666 |
tgaaaatatgtctgatattcttgcttttcctaactcaaaaatcagtaaagatgttcaaattctgatcagatttatattctt |
49774746 |
T |
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