View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_9 (Length: 588)
Name: NF1404_high_9
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 92 - 437
Target Start/End: Complemental strand, 25996784 - 25996439
Alignment:
| Q |
92 |
attaagaagaaacttggtgtgtttatgaagaatgttgaagatttaggagttcaagctgataactgtagccgtgacattaggagggctaggactgttgttc |
191 |
Q |
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| T |
25996784 |
attaagaagaaacttggtgtgtttatgaagaatgttgaagatttaggagttcaagctgataactgtagccgtgacattaggagagctaggactgttgttc |
25996685 |
T |
|
| Q |
192 |
tgcaaagaatcattaaacatcctaacatttgaagaattatggtatttggtcttgtttgttaaggttggagaacacatatttttcttatgtgtgtgttgtg |
291 |
Q |
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| T |
25996684 |
tgcaaagaatcattaagcatcctaacatttgaagaattatggtatttggtcttgtttgttaaggttggagaacacatatttttcttatgtgtgtgttgtg |
25996585 |
T |
|
| Q |
292 |
atatatttgtttatttatggatccatgcattaatgggttcttgttgtttaagataataacaggacatatatattcggtatgtcttgtgacacttgcagct |
391 |
Q |
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| T |
25996584 |
atatatttgtttatttatggatccatgcattaatgggttcttgttgtttaagataataataggacatatatattcggtatgtcttgtgacacttgcagct |
25996485 |
T |
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| Q |
392 |
atataaatttatttattcttttgaagcaatattagtgtgctaatgc |
437 |
Q |
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| T |
25996484 |
atataaatttatttattcttttgaagcaatattagtgtgctaatgc |
25996439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 482 - 573
Target Start/End: Complemental strand, 25996394 - 25996304
Alignment:
| Q |
482 |
ggatatgagtaactaatttggaggttagttctttcgttgggtcgagtatcccttatactttttccgaattgtggataaagtaccgtttgtat |
573 |
Q |
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| T |
25996394 |
ggatatgagtaactaatttggaggttagttctttcattggatcgcgtatctcttatactttttccgaattgt-gataaagtaccgtttgtat |
25996304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 12557707 - 12557652
Alignment:
| Q |
113 |
tttatgaagaatgttgaagatttaggagttcaagctgataactgtagccgtgacat |
168 |
Q |
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| T |
12557707 |
tttatgaagaatgtcgaagatttaggagcacaagctgatacatgtagccgtgacat |
12557652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 24361161 - 24361108
Alignment:
| Q |
295 |
tatttgtttatttatggatccatgcattaatgggttcttgttgtttaagataataa |
350 |
Q |
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| T |
24361161 |
tatttgtttatttatggatccatgcttaaattggttcttgt--tttaagataataa |
24361108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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