View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_high_91 (Length: 317)

Name: NF1404_high_91
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_high_91
NF1404_high_91
[»] chr7 (6 HSPs)
chr7 (202-298)||(41267930-41268027)
chr7 (34-137)||(41267761-41267865)
chr7 (211-263)||(22974008-22974060)
chr7 (207-303)||(39474942-39475037)
chr7 (211-263)||(36619270-36619322)
chr7 (210-270)||(45697205-45697265)
[»] scaffold0635 (1 HSPs)
scaffold0635 (207-274)||(2102-2169)
[»] chr2 (14 HSPs)
chr2 (207-274)||(10106615-10106682)
chr2 (210-263)||(16325633-16325686)
chr2 (204-263)||(22593172-22593231)
chr2 (207-274)||(31740773-31740840)
chr2 (207-257)||(20963122-20963172)
chr2 (210-263)||(2784970-2785023)
chr2 (210-263)||(34346302-34346355)
chr2 (210-263)||(39201523-39201576)
chr2 (207-251)||(3848926-3848970)
chr2 (207-263)||(6358163-6358219)
chr2 (210-258)||(20116627-20116675)
chr2 (210-274)||(31088361-31088425)
chr2 (207-263)||(37560211-37560267)
chr2 (210-278)||(37804906-37804974)
[»] chr1 (10 HSPs)
chr1 (210-274)||(5504059-5504123)
chr1 (207-279)||(44716228-44716300)
chr1 (207-295)||(10336524-10336611)
chr1 (210-302)||(14254284-14254375)
chr1 (210-278)||(34719800-34719868)
chr1 (210-256)||(11397905-11397951)
chr1 (207-257)||(38859129-38859179)
chr1 (214-263)||(33498859-33498908)
chr1 (212-264)||(34697373-34697425)
chr1 (222-258)||(50094948-50094984)
[»] chr5 (15 HSPs)
chr5 (207-269)||(22655170-22655231)
chr5 (214-274)||(23247370-23247430)
chr5 (207-281)||(20156156-20156230)
chr5 (214-263)||(21375390-21375439)
chr5 (207-263)||(14152089-14152145)
chr5 (218-278)||(14588640-14588700)
chr5 (210-274)||(42086355-42086419)
chr5 (211-274)||(12705042-12705105)
chr5 (202-263)||(15034114-15034176)
chr5 (207-280)||(3653926-3653999)
chr5 (210-263)||(9805043-9805096)
chr5 (218-263)||(20255408-20255453)
chr5 (214-263)||(35245025-35245074)
chr5 (211-263)||(9812911-9812963)
chr5 (211-263)||(12766170-12766222)
[»] chr3 (9 HSPs)
chr3 (207-263)||(23511605-23511661)
chr3 (210-246)||(32522034-32522070)
chr3 (207-263)||(33251700-33251756)
chr3 (210-274)||(47219171-47219235)
chr3 (202-264)||(47471868-47471931)
chr3 (218-263)||(3136718-3136763)
chr3 (210-251)||(30045871-30045912)
chr3 (202-245)||(11393482-11393526)
chr3 (211-251)||(46797978-46798018)
[»] chr8 (11 HSPs)
chr8 (207-282)||(18374033-18374108)
chr8 (210-263)||(14846617-14846670)
chr8 (214-274)||(583843-583903)
chr8 (219-263)||(3418537-3418581)
chr8 (202-302)||(33401806-33401905)
chr8 (202-263)||(26570966-26571028)
chr8 (210-251)||(3379827-3379868)
chr8 (218-263)||(22958812-22958857)
chr8 (202-258)||(43027352-43027409)
chr8 (207-251)||(25848230-25848274)
chr8 (210-270)||(45521203-45521263)
[»] chr4 (11 HSPs)
chr4 (202-264)||(46108733-46108796)
chr4 (210-274)||(40780876-40780940)
chr4 (223-282)||(20354661-20354720)
chr4 (215-274)||(36145235-36145294)
chr4 (218-263)||(6779254-6779299)
chr4 (210-263)||(21429344-21429397)
chr4 (210-251)||(25406578-25406619)
chr4 (214-263)||(41162901-41162950)
chr4 (210-302)||(16645123-16645214)
chr4 (207-263)||(17946532-17946588)
chr4 (207-251)||(42722391-42722435)
[»] chr6 (7 HSPs)
chr6 (210-251)||(34954634-34954675)
chr6 (207-251)||(8888936-8888980)
chr6 (211-274)||(8611990-8612053)
chr6 (210-264)||(14783435-14783489)
chr6 (210-263)||(11142645-11142698)
chr6 (207-263)||(374986-375042)
chr6 (210-282)||(5029840-5029912)
[»] scaffold0209 (1 HSPs)
scaffold0209 (214-274)||(12603-12663)
[»] scaffold0002 (1 HSPs)
scaffold0002 (210-270)||(604-664)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 41267930 - 41268027
Alignment:
Q  202 atcggtttc-gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctcccataaaaatcgaactcg 298  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  41267930 atcggtttccgacccatcaaaggtggacgactaatctaactcatgcgtagaggcatgcacactaatcaagcgttattctcccctaaaaatcgaactcg 41268027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 41267761 - 41267865
Alignment:
Q  34 catctacctcttctgcatcccatcatcnnnnnnnacctttacagccaagccacaggttttctctcataaagagattggg-aaaaaactaaagtagttgta 132  Q
    |||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41267761 catctaccccttctgcatcccatcatctttttttacctttacagccaagccacaggttttctctcataaagagattgggaaaaaaactaaagtagttgta 41267860  T
Q  133 gggtg 137  Q
    |||||    
T  41267861 gggtg 41267865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 22974060 - 22974008
Alignment:
Q  211 gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||||| ||||||||||||||||||||| ||||||| |||| |||||||||||    
T  22974060 gacccaccaaaggtggacgactaatctggctcatgcgtagacgcatgcacact 22974008  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 39475037 - 39474942
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctcccataaaaatcgaactcggtata 303  Q
    ||||||||||  |||||||||||||||||| | ||||||| |||| | |||| |||| | |||||||| ||| ||||||  |||||||| |||||||    
T  39475037 tttcgacccactaaaggtggacgactaatccggctcatgcgtagaggtatgcgcactgaccaagcgttgttc-cccataggaatcgaacccggtata 39474942  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 36619270 - 36619322
Alignment:
Q  211 gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||||| ||| ||||||||||||||| | ||||||| |||| |||||||||||    
T  36619270 gacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcacact 36619322  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 45697205 - 45697265
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaag 270  Q
    ||||||| ||||||||||||||||| |  |||||||| |||| |||||| |||| ||||||    
T  45697205 cgacccaccaaaggtggacgactaacccaactcatgcgtagaggcatgcgcactgatcaag 45697265  T

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Target: scaffold0635 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 2102 - 2169
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    |||||||| || |||||||||||||||||| |||| |||||||||||||||| | |||||||||||||    
T  2102 tttcgacctattaaaggtggacgactaatccgacttatgcatagaagcatgcgcgctaatcaagcgtt 2169  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 10106682 - 10106615
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    |||||||| || |||||||||||||||||| |||| |||||||||||||||| | |||||||||||||    
T  10106682 tttcgacctattaaaggtggacgactaatccgacttatgcatagaagcatgcgcgctaatcaagcgtt 10106615  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 16325686 - 16325633
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||| ||| ||||||||||||||||| ||||||| |||| |||||||||||    
T  16325686 cgacccaccaatggtggacgactaatctggctcatgcgtagaggcatgcacact 16325633  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 22593231 - 22593172
Alignment:
Q  204 cggtttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||| ||||||| ||||||||||||||||||| | ||||||| |||| |||||| ||||    
T  22593231 cggttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcact 22593172  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 31740773 - 31740840
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    |||||| ||| |||||||||||||||| |||||||| ||| ||||||||| | |||| | ||||||||    
T  31740773 tttcgatccaccaaaggtggacgactagtctgactcgtgcctagaagcattcgcactgaccaagcgtt 31740840  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 20963122 - 20963172
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatg 257  Q
    |||||||||||||||||||| ||||||||||| ||||| | |||| |||||    
T  20963122 tttcgacccatcaaaggtgggcgactaatctgcctcatacgtagaggcatg 20963172  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 2785023 - 2784970
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||| |||||| | ||||||||||||||||||||||| |||| |||||| ||||    
T  2785023 cgactcatcaatgatggacgactaatctgactcatgcgtagaggcatgcgcact 2784970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 34346302 - 34346355
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||| ||||||||  ||| ||||||||||||||| |||| |||||||||||    
T  34346302 cgacccaccaaaggtgagcgattaatctgactcatgcgtagaggcatgcacact 34346355  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 39201523 - 39201576
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||| |||||||| |||||||||| | ||||||| |||| |||||||||||    
T  39201523 cgacccaccaaaggtgaacgactaatccggctcatgcgtagaggcatgcacact 39201576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 3848926 - 3848970
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcataga 251  Q
    ||||||||||||||||||| |||||||||| ||||| ||| ||||    
T  3848926 tttcgacccatcaaaggtgaacgactaatccgactcgtgcgtaga 3848970  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 6358163 - 6358219
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||||||||| ||| ||||||||||||||| | ||||||| |||| |||||| ||||    
T  6358163 tttcgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcact 6358219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 20116627 - 20116675
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgc 258  Q
    |||||||||||||||||||| |||||| | ||||||| |||| ||||||    
T  20116627 cgacccatcaaaggtggacggctaatccggctcatgcgtagaggcatgc 20116675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 31088425 - 31088361
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    ||||||||||| |||||  | |||||||||||||||| |||| ||||||| |||  |||||||||    
T  31088425 cgacccatcaatggtgggtggctaatctgactcatgcgtagaggcatgcatactgttcaagcgtt 31088361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 37560267 - 37560211
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||||||||||||||||||||||| ||||| | ||| ||| |||| |||||| ||||    
T  37560267 tttcgacccatcaaaggtggacgattaatccggctcgtgcgtagaggcatgcgcact 37560211  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 37804906 - 37804974
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattc 278  Q
    ||||||||||| ||||| | || |||||||||||||| |||  |||||| |||||  ||||||||||||    
T  37804906 cgacccatcaatggtgggcaacaaatctgactcatgcgtagcggcatgcgcactagccaagcgttattc 37804974  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 5504123 - 5504059
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    ||||||||||||||||||||||||||| | ||||||| |||| |||||  |||||||||||||||    
T  5504123 cgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgtgcactaatcaagcgtt 5504059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 44716228 - 44716300
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattct 279  Q
    |||||||||| ||||  |||||||||||||||||||||||||| | |||||| ||||| |||| |||| ||||    
T  44716228 tttcgacccaccaaaaatggacgactaatctgactcatgcataaaggcatgcgcactagtcaaacgttgttct 44716300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 10336611 - 10336524
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctcccataaaaatcgaac 295  Q
    |||||| ||||||||||||||||| ||||| | ||||||| |||| |||||| ||||  ||||||||| ||| ||| | ||||||||||    
T  10336611 tttcgatccatcaaaggtggacgattaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttc-cccctgaaaatcgaac 10336524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 14254284 - 14254375
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctcccataaaaatcgaactcggtat 302  Q
    ||||||||||||||||||||||||||| | ||||||| || | ||||||  |||   |||||||| ||| ||| | |||||||||||||||||    
T  14254284 cgacccatcaaaggtggacgactaatccggctcatgcgtaaaggcatgcgtactggccaagcgttgttc-cccctgaaaatcgaactcggtat 14254375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 34719868 - 34719800
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattc 278  Q
    ||||||| ||||||||  ||||||||||||||| ||| |||| |||||| ||||  |||||||||||||    
T  34719868 cgacccaccaaaggtgagcgactaatctgactcgtgcgtagaggcatgcgcactggtcaagcgttattc 34719800  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 11397905 - 11397951
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcat 256  Q
    ||||||| ||||||||||||||||||| ||||||||| |||| ||||    
T  11397905 cgacccaccaaaggtggacgactaatccgactcatgcgtagaggcat 11397951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 38859129 - 38859179
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatg 257  Q
    |||||||||||||||||||| ||| ||||||||||| ||| |||| |||||    
T  38859129 tttcgacccatcaaaggtgggcgattaatctgactcgtgcgtagaggcatg 38859179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 33498859 - 33498908
Alignment:
Q  214 ccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||||||||||||||||| | ||||||| |||| |||||| ||||    
T  33498859 ccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcact 33498908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 34697425 - 34697373
Alignment:
Q  212 acccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacacta 264  Q
    |||||||||| |||| ||||||||| | ||||||| |||| ||||||||||||    
T  34697425 acccatcaaaagtgggcgactaatccggctcatgcgtagaggcatgcacacta 34697373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 50094984 - 50094948
Alignment:
Q  222 ggtggacgactaatctgactcatgcatagaagcatgc 258  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  50094984 ggtggacgactaatccgactcatgcgtagaagcatgc 50094948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 22655170 - 22655231
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaa 269  Q
    |||||||||| |||||||||||||||||||||||| |||| |||| ||||||||||| |||||    
T  22655170 tttcgaccca-caaaggtggacgactaatctgacttatgcgtagaggcatgcacactgatcaa 22655231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 23247370 - 23247430
Alignment:
Q  214 ccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    ||||||||||||||||||||||||| ||| ||| |||| ||||||| ||| ||||||||||    
T  23247370 ccatcaaaggtggacgactaatctggctcgtgcgtagaggcatgcatactgatcaagcgtt 23247430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 20156156 - 20156230
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctcc 281  Q
    |||||| |||| || ||||||||| |||||||||||||||||||| |||||| |||||  |||| ||| ||||||    
T  20156156 tttcgatccattaatggtggacgattaatctgactcatgcatagatgcatgcgcactagccaagtgttgttctcc 20156230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 21375439 - 21375390
Alignment:
Q  214 ccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||| ||||    
T  21375439 ccatcaaagatggacgactaatccgactcatgcgtagaagcatgcgcact 21375390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 14152145 - 14152089
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||||| ||||||| ||||||||| ||||| | |||||| |||||||||||||||||    
T  14152145 tttcgatccatcaatggtggacgattaatccggctcatggatagaagcatgcacact 14152089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 14588640 - 14588700
Alignment:
Q  218 caaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattc 278  Q
    ||||||||||||||||||| | ||||||| |||| |||||| ||||  |||||||||||||    
T  14588640 caaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttattc 14588700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 42086419 - 42086355
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    ||||||| ||||||||||||||||||| | ||||||| |||| |||||| ||||  |||||||||    
T  42086419 cgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgtt 42086355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 12705105 - 12705042
Alignment:
Q  211 gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    |||||| ||||||||| ||||||||| |  |||||| ||||||||||||||||  |||||||||    
T  12705105 gacccaccaaaggtgggcgactaatccggttcatgcgtagaagcatgcacactggtcaagcgtt 12705042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 15034176 - 15034114
Alignment:
Q  202 atcggtttc-gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||| || ||||||||||||||| ||||||| | ||||||| |||| |||||||||||    
T  15034176 atcggtttccgatccatcaaaggtggacaactaatcaggctcatgcgtagaggcatgcacact 15034114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 3653926 - 3653999
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctc 280  Q
    |||||| ||| ||||||||||||||||||| | ||| ||| |||| |||||| ||||  ||||||||| |||||    
T  3653926 tttcgatccaccaaaggtggacgactaatccgcctcgtgcgtagaggcatgcgcactggtcaagcgttgttctc 3653999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 9805096 - 9805043
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||| ||||||||||||||||||| | ||||||| |||| |||||| ||||    
T  9805096 cgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcact 9805043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 20255453 - 20255408
Alignment:
Q  218 caaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||||||||||||| ||||||||| |||| |||||| ||||    
T  20255453 caaaggtggacgactaatccgactcatgcgtagaggcatgcgcact 20255408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 35245025 - 35245074
Alignment:
Q  214 ccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||||||| | ||||||| | ||||||| ||||||||||||||||    
T  35245025 ccatcaaaggtgggcaactaatcaggctcatgcgtagaagcatgcacact 35245074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 9812963 - 9812911
Alignment:
Q  211 gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||||| ||||||||| ||||||||| |  |||||| ||||||||||||||||    
T  9812963 gacccaccaaaggtgggcgactaatccggttcatgcgtagaagcatgcacact 9812911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 12766222 - 12766170
Alignment:
Q  211 gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||||| ||||||||| |||||||||||  |||||| |||| |||||||||||    
T  12766222 gacccaccaaaggtgggcgactaatctggttcatgcgtagaggcatgcacact 12766170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 23511661 - 23511605
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||| |||||| ||||    
T  23511661 tttcgacccatcaaaggtggacgattaatccgactcatgcgtagaggcatgcgcact 23511605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 32522070 - 32522034
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgc 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  32522070 cgacccatcaaaggtggacgactaatctgactcatgc 32522034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 33251756 - 33251700
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||||||||| |||||||||||||| | ||||||| |||| |||||||||||    
T  33251756 tttcgacccatcaaatgtggacgactaatccggctcatgcgtagaggcatgcacact 33251700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 47219235 - 47219171
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    ||||||||||||||||||||||||||| | ||||||| |||| |||||| |||||  ||||||||    
T  47219235 cgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactagccaagcgtt 47219171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 47471931 - 47471868
Alignment:
Q  202 atcggtttc-gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacacta 264  Q
    ||||||||| |||||| ||||||||||||||||||  | ||||||| ||||||||||| |||||    
T  47471931 atcggtttccgacccaccaaaggtggacgactaattcggctcatgcgtagaagcatgcgcacta 47471868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 3136718 - 3136763
Alignment:
Q  218 caaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||||||||||||| ||||||||| |||| |||||| ||||    
T  3136718 caaaggtggacgactaatccgactcatgcgtagaggcatgcgcact 3136763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 30045912 - 30045871
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcataga 251  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||    
T  30045912 cgacccatcaaaggtggacgactaatcagactcgtgcgtaga 30045871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 11393482 - 11393526
Alignment:
Q  202 atcggtttc-gacccatcaaaggtggacgactaatctgactcatg 245  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||||    
T  11393482 atcggtttccgaccaatcaaaggtggacgactaatctggctcatg 11393526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 46798018 - 46797978
Alignment:
Q  211 gacccatcaaaggtggacgactaatctgactcatgcataga 251  Q
    |||||||||||||||||| |||| |||||||||||| ||||    
T  46798018 gacccatcaaaggtggacaactagtctgactcatgcgtaga 46797978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 18374108 - 18374033
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctccc 282  Q
    |||||||||| ||||| ||||||||||||| | ||||||| |||| |||||| ||||  ||||||||| |||||||    
T  18374108 tttcgacccaccaaagttggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttctccc 18374033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 14846670 - 14846617
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||| ||||||||||||||| ||||||||||||| |||| |||||| ||||    
T  14846670 cgacccaccaaaggtggacgacttatctgactcatgcgtagaggcatgcgcact 14846617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 583903 - 583843
Alignment:
Q  214 ccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    ||||||||||||| ||||||||| ||||||||| |||| |||||| ||||  |||||||||    
T  583903 ccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgtt 583843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 3418537 - 3418581
Alignment:
Q  219 aaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||    
T  3418537 aaaggtggacgactaatctgactcatgcgtagacgcatgcgcact 3418581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 33401806 - 33401905
Alignment:
Q  202 atcggtttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctcccataaaaatcgaactcggta 301  Q
    |||||||| || |||  |||||||| ||||||||| ||||||||| |||| |||||||||||  ||||| ||| ||| ||| | |||||||||| |||||    
T  33401806 atcggttttgatccactaaaggtgggcgactaatccgactcatgcgtagaggcatgcacactggtcaagtgttgttc-cccctgaaaatcgaacccggta 33401904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 26571028 - 26570966
Alignment:
Q  202 atcggtttc-gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||| ||| |||||||||||||||||||||| | ||||||| |||| |||| ||||||    
T  26571028 atcggtttccgactcatcaaaggtggacgactaatccggctcatgcgtagatgcatacacact 26570966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 3379827 - 3379868
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcataga 251  Q
    ||||||| |||| |||||||||||||| ||||||||||||||    
T  3379827 cgacccaccaaaagtggacgactaatccgactcatgcataga 3379868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 22958857 - 22958812
Alignment:
Q  218 caaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||||||||||||| | ||||||||||||  ||||||||||    
T  22958857 caaaggtggacgactaatccggctcatgcatagagacatgcacact 22958812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 43027409 - 43027352
Alignment:
Q  202 atcggtttc-gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgc 258  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||||| |||| ||||||    
T  43027409 atcggtttccgacccatcaaagatggacgactaatccggctcatgcgtagaggcatgc 43027352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 25848274 - 25848230
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcataga 251  Q
    |||||||||| |||||||||||||||| || ||||||||| ||||    
T  25848274 tttcgacccagcaaaggtggacgactagtccgactcatgcgtaga 25848230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 45521263 - 45521203
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaag 270  Q
    ||||||||||||||||  ||||||||| | ||||||| |||| |||||| |||| ||||||    
T  45521263 cgacccatcaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactgatcaag 45521203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 46108796 - 46108733
Alignment:
Q  202 atcggtttc-gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacacta 264  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||||| |||| |||||| |||||    
T  46108796 atcggtttccgacccatcaaaagtggacgactaatctggctcatgcgtagaggcatgcgcacta 46108733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 40780876 - 40780940
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    ||||||| ||||||||||||||||||| | ||||||| |||| |||||| |||| | ||||||||    
T  40780876 cgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagcgtt 40780940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 20354720 - 20354661
Alignment:
Q  223 gtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctccc 282  Q
    |||||||||||||| ||||||||| |||| |||||| |||||  |||||||| |||||||    
T  20354720 gtggacgactaatccgactcatgcgtagaggcatgcgcactagccaagcgttgttctccc 20354661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 36145235 - 36145294
Alignment:
Q  215 catcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    |||||||||||||||||||||| | ||||||  |||| |||||| |||| ||||||||||    
T  36145235 catcaaaggtggacgactaatccggctcatgtgtagaggcatgcgcactgatcaagcgtt 36145294  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 6779299 - 6779254
Alignment:
Q  218 caaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||||||||||||| | |||||||||||| |||||| ||||    
T  6779299 caaaggtggacgactaatccggctcatgcatagaggcatgcgcact 6779254  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 21429397 - 21429344
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||| |||||||||||||||| |||||||| ||| |||| |||||| ||||    
T  21429397 cgacccaccaaaggtggacgactagtctgactcgtgcgtagaggcatgcgcact 21429344  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 25406578 - 25406619
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcataga 251  Q
    |||||||||||||||| ||||||||||||| |||||| ||||    
T  25406578 cgacccatcaaaggtgaacgactaatctgattcatgcgtaga 25406619  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 41162901 - 41162950
Alignment:
Q  214 ccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||||||||| ||||||||  | |||||||||||||||||| |||||    
T  41162901 ccatcaaaggtgggcgactaattcggctcatgcatagaagcatgtacact 41162950  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 16645214 - 16645123
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctcccataaaaatcgaactcggtat 302  Q
    ||||||| || |||||| ||||||||| ||||||||  |||| |||||||||||   |||||||| |||| || | |||||||||| ||||||    
T  16645214 cgacccaccacaggtgggcgactaatcagactcatgtgtagaggcatgcacactggccaagcgttgttcttcc-tgaaaatcgaacccggtat 16645123  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 17946588 - 17946532
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||| || |||| |||||| ||||||||||||||||  ||||||||||| ||||    
T  17946588 tttcgactcaccaaaagtggacaactaatctgactcatgtgtagaagcatgcgcact 17946532  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 42722391 - 42722435
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcataga 251  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||    
T  42722391 tttcgacccaccattggtggacgactaatccgactcatgcataga 42722435  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 34954634 - 34954675
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcataga 251  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  34954634 cgacccatcaaaggtggacgactaatctggctcatgcgtaga 34954675  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 8888980 - 8888936
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcataga 251  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||||    
T  8888980 tttcgatccatcaaaggtggacgactaatccgactcatgcgtaga 8888936  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 8611990 - 8612053
Alignment:
Q  211 gacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    |||||| ||||||||| ||||||||| |  |||||| ||||||||||||||||  |||||||||    
T  8611990 gacccaccaaaggtgggcgactaatccggttcatgcgtagaagcatgcacactggtcaagcgtt 8612053  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 14783435 - 14783489
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacacta 264  Q
    ||||||| ||| ||||||||||||||| | ||||||| |||| ||||||||||||    
T  14783435 cgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcacacta 14783489  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 11142698 - 11142645
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    ||||||| ||||| ||||| ||||||||||||||||| |||| |||||| ||||    
T  11142698 cgacccaccaaagttggacaactaatctgactcatgcgtagaggcatgcgcact 11142645  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 374986 - 375042
Alignment:
Q  207 tttcgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacact 263  Q
    |||||||||||||||| | || ||||||||  ||||||||||||| |||||| ||||    
T  374986 tttcgacccatcaaagatagatgactaatccaactcatgcatagaggcatgcgcact 375042  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 5029912 - 5029840
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgttattctccc 282  Q
    ||||||||||||| ||| |||||||||  |||||||| |||| |||||| |||| | ||| |||| |||||||    
T  5029912 cgacccatcaaagatgggcgactaatccaactcatgcgtagaggcatgcgcactgaccaaacgttgttctccc 5029840  T

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Target: scaffold0209 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 12663 - 12603
Alignment:
Q  214 ccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaagcgtt 274  Q
    ||||||||||||| ||||||||| ||||||||| |||| |||||| ||||  |||||||||    
T  12663 ccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgtt 12603  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 664 - 604
Alignment:
Q  210 cgacccatcaaaggtggacgactaatctgactcatgcatagaagcatgcacactaatcaag 270  Q
    ||||||| ||||||||  ||||||||||| ||||| | |||| ||||||||||| ||||||    
T  664 cgacccaccaaaggtgagcgactaatctggctcatacgtagaggcatgcacactgatcaag 604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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