View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_high_94 (Length: 309)

Name: NF1404_high_94
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_high_94
NF1404_high_94
[»] chr5 (5 HSPs)
chr5 (1-161)||(18255011-18255175)
chr5 (1-77)||(18313303-18313379)
chr5 (1-77)||(18593598-18593674)
chr5 (1-77)||(7452944-7453020)
chr5 (1-35)||(29087834-29087868)
[»] chr7 (18 HSPs)
chr7 (1-77)||(47325534-47325610)
chr7 (1-77)||(31971784-31971860)
chr7 (3-77)||(35745481-35745555)
chr7 (1-77)||(5859932-5860008)
chr7 (1-77)||(44353213-44353289)
chr7 (13-77)||(3419048-3419112)
chr7 (1-77)||(10244536-10244612)
chr7 (5-77)||(25161168-25161240)
chr7 (1-77)||(34391538-34391614)
chr7 (1-76)||(3867471-3867545)
chr7 (1-72)||(43482261-43482331)
chr7 (15-77)||(40726140-40726202)
chr7 (12-77)||(33434480-33434545)
chr7 (12-75)||(37795363-37795426)
chr7 (12-75)||(37795691-37795754)
chr7 (1-35)||(38306616-38306650)
chr7 (1-77)||(6585242-6585318)
chr7 (1-77)||(42454383-42454459)
[»] chr2 (11 HSPs)
chr2 (1-77)||(39338510-39338586)
chr2 (1-77)||(43816096-43816172)
chr2 (1-70)||(13512495-13512564)
chr2 (1-77)||(3745697-3745773)
chr2 (1-77)||(5254609-5254684)
chr2 (1-77)||(14436916-14436992)
chr2 (1-76)||(15457818-15457893)
chr2 (1-35)||(387532-387566)
chr2 (1-71)||(43248882-43248952)
chr2 (1-77)||(14106172-14106247)
chr2 (1-77)||(14405555-14405630)
[»] chr1 (8 HSPs)
chr1 (1-77)||(7002543-7002619)
chr1 (1-77)||(30685573-30685649)
chr1 (1-70)||(46814121-46814190)
chr1 (1-77)||(31584689-31584764)
chr1 (1-77)||(40216155-40216231)
chr1 (1-77)||(41920813-41920889)
chr1 (1-71)||(27031496-27031566)
chr1 (1-77)||(6804894-6804969)
[»] scaffold0172 (1 HSPs)
scaffold0172 (1-76)||(19274-19349)
[»] chr8 (13 HSPs)
chr8 (1-74)||(35815896-35815969)
chr8 (5-77)||(31207011-31207083)
chr8 (1-77)||(12897925-12898001)
chr8 (1-73)||(16457128-16457200)
chr8 (1-77)||(20138782-20138858)
chr8 (1-77)||(22773977-22774053)
chr8 (4-77)||(24995044-24995117)
chr8 (17-77)||(9659474-9659534)
chr8 (1-77)||(15821026-15821101)
chr8 (1-77)||(32065934-32066010)
chr8 (1-71)||(38577441-38577511)
chr8 (1-35)||(9519862-9519896)
chr8 (1-73)||(37986508-37986580)
[»] chr6 (5 HSPs)
chr6 (5-77)||(3254317-3254389)
chr6 (1-73)||(3117850-3117922)
chr6 (12-77)||(15132489-15132554)
chr6 (1-34)||(33697789-33697822)
chr6 (1-77)||(15944355-15944431)
[»] chr3 (15 HSPs)
chr3 (1-77)||(2392152-2392228)
chr3 (1-77)||(2393915-2393991)
chr3 (1-77)||(19176862-19176938)
chr3 (9-77)||(5556943-5557011)
chr3 (1-77)||(21343703-21343779)
chr3 (1-77)||(47236054-47236130)
chr3 (1-77)||(50305223-50305299)
chr3 (1-77)||(53248256-53248332)
chr3 (1-71)||(40023224-40023294)
chr3 (13-71)||(50560012-50560070)
chr3 (1-77)||(34475407-34475483)
chr3 (1-77)||(45164209-45164285)
chr3 (1-35)||(30352130-30352164)
chr3 (1-75)||(37158662-37158735)
chr3 (1-69)||(9583710-9583778)
[»] chr4 (10 HSPs)
chr4 (12-77)||(30167212-30167277)
chr4 (1-77)||(35329363-35329439)
chr4 (1-77)||(27555579-27555656)
chr4 (1-77)||(46698428-46698504)
chr4 (205-239)||(35121303-35121337)
chr4 (1-77)||(2826137-2826213)
chr4 (1-71)||(35341006-35341078)
chr4 (1-77)||(7703043-7703118)
chr4 (1-45)||(49528442-49528486)
chr4 (1-77)||(4306061-4306136)
[»] scaffold0068 (1 HSPs)
scaffold0068 (24-77)||(35473-35526)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 18255175 - 18255011
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgattnnnnnnnncta----ttcatcat 96  Q
    |||||||||||||||||||||||||||||| ||||  | | | ||||| | || |||||||| ||||||||||||||          |    ||||||||    
T  18255175 tatgcggcactatttgtatcttgtttcgtctataccctgcatcttacggggataacgtttaacaatatttgccgattcaaaaaaaaaaaatgttcatcat 18255076  T
Q  97 tattataattttcaacatcctcaatattttcttcagaaaatgtaggtacaagttcatcgggttct 161  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  18255075 tattataattttcaacatcctcactattttcttgagaaaatgtaggtacaagttcatcgggttct 18255011  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18313379 - 18313303
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| ||||| |||||||||| ||||||| || ||| ||||  ||||||||||||||||||||| ||||||    
T  18313379 tatgcggcaccatttgcatcttgtttcatccataccttgcgtcttacaggaatgacgtttaataatatttaccgatt 18313303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18593598 - 18593674
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| || | ||||||||||||||||||| || | | || || | ||||||||||||||||||||||||||    
T  18593598 tatgcggcaccatatttatcttgtttcgtccataccttgcatcttgcggggatgacgtttaataatatttgccgatt 18593674  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7452944 - 7453020
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||| || |||||||| || ||| || |  | |||| |||||||||||||||||||||    
T  7452944 tatgcggcaccatttgtatcttgatttgtccataccttgcgtcttgcatggatgatgtttaataatatttgccgatt 7453020  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29087834 - 29087868
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatac 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  29087834 tatgcggcaccatttgtatcttgtttcgtccatac 29087868  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 47325610 - 47325534
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||| |||| |||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||    
T  47325610 tatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttacgaggatgacgtttaataatatttgccgatt 47325534  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31971860 - 31971784
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || ||| || || | ||| ||||||||||||||||||||||    
T  31971860 tatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgatt 31971784  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 35745555 - 35745481
Alignment:
Q  3 tgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||| ||| |||||||||||||||||||||||| || |||||||||   ||||||||||||||||||||| ||||    
T  35745555 tgcgacaccatttgtatcttgtttcgtccataccttgcgttttacggagatgacgtttaataatatttgctgatt 35745481  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5860008 - 5859932
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||   | ||| || || | ||||||||||||||||||||||||||    
T  5860008 tatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaataatatttgccgatt 5859932  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44353289 - 44353213
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || ||| || || | ||| ||||||||||||||| ||||||    
T  44353289 tatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttaccgatt 44353213  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 3419112 - 3419048
Alignment:
Q  13 tttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||||||||||||||||||||| || ||| || || | |||||||||||||||||||| |||||    
T  3419112 tttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgtcgatt 3419048  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10244536 - 10244612
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || ||| || ||   |||  |||||||||||||||||||||    
T  10244536 tatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggagatggagtttaataatatttgccgatt 10244612  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 25161168 - 25161240
Alignment:
Q  5 cggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||| ||||| |||||||||||| ||||| |||  | ||||| | ||||||||||||||||||||||||||    
T  25161168 cggcaccatttgcatcttgtttcgttcataccttaaatcttacggggatgacgtttaataatatttgccgatt 25161240  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34391538 - 34391614
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||||||| |||||||||||||||||||||||||  | |||  | || | ||||||||||||||||||||| ||||    
T  34391538 tatgcggcattatttgtatcttgtttcgtccataccctgcgtcctgcggggatgacgtttaataatatttgctgatt 34391614  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 3867471 - 3867545
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgat 76  Q
    |||| ||||| ||||||||||||||||||| |||| |||||| || || | |||| ||||||||||||||||||||    
T  3867471 tatgtggcaccatttgtatcttgtttcgtcaataccttacgtcttgcg-ggatgaagtttaataatatttgccgat 3867545  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 43482261 - 43482331
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgc 72  Q
    ||||| |||||||||||||||| |||||||||||| || || | |||| | |||||||||||||||||||||    
T  43482261 tatgcagcactatttgtatcttatttcgtccataccttgcg-tctacggggatgacgtttaataatatttgc 43482331  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 40726202 - 40726140
Alignment:
Q  15 tgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||||||||||||||||||| || ||| || || | ||||| ||||||||||||||||||||    
T  40726202 tgtatcttgtttcgtccataccttgcgtcttgcggggatgacatttaataatatttgccgatt 40726140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 33434545 - 33434480
Alignment:
Q  12 atttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||||| ||||||||||| || ||| || || | ||| ||||||||||||||||||||||    
T  33434545 atttgtatcttgcttcgtccataccttgcgtattgcggggatggcgtttaataatatttgccgatt 33434480  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 37795363 - 37795426
Alignment:
Q  12 atttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccga 75  Q
    |||||||||||||||||||||||| || ||| ||  | | | ||||||||||||||||||||||    
T  37795363 atttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccga 37795426  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 37795691 - 37795754
Alignment:
Q  12 atttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccga 75  Q
    |||||||||||||||||||||||| || ||| ||  | | | ||||||||||||||||||||||    
T  37795691 atttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccga 37795754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38306616 - 38306650
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatac 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  38306616 tatgcggcaccatttgtatcttgtttcgtccatac 38306650  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6585242 - 6585318
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||| ||||| |||||||||||||||||||||| | || | | || || | ||| ||||||||||||||||| ||||    
T  6585242 tatgtggcaccatttgtatcttgtttcgtccattccttgcatcttgcggggatggcgtttaataatatttgctgatt 6585318  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 42454459 - 42454383
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| ||||||| ||||||||||| |||  || ||| || || | |||| |||||||||||||||| ||||    
T  42454459 tatgcggcaccatttgtaccttgtttcgtctatatcttgcgtcttgcggggatgatgtttaataatatttgctgatt 42454383  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39338586 - 39338510
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| ||||||||||||||||||||||||||| ||| ||||||  ||| ||||||||||||||||||||||    
T  39338586 tatgcggcaccatttgtatcttgtttcgtccatacattgcgtcttacgatgatggcgtttaataatatttgccgatt 39338510  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43816172 - 43816096
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||  |||||||  ||||||||||||||| || |||||| || ||||||||||||||||||||||||||||    
T  43816172 tatgcggcatcatttgtactttgtttcgtccataccttgcgttttgcgggaatgacgtttaataatatttgccgatt 43816096  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13512564 - 13512495
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatattt 70  Q
    |||||||||  |||||||| |||||||||||||||||| ||| || || |||||||||||||||||||||    
T  13512564 tatgcggcatcatttgtattttgtttcgtccatacattgcgtcttgcgggaatgacgtttaataatattt 13512495  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3745697 - 3745773
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||| |||| |||||||||||||||||||||||| || ||| ||| | | ||||| ||||||||||||||||||||    
T  3745697 tatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttatggggatgacatttaataatatttgccgatt 3745773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5254609 - 5254684
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| ||||||||||  |||||||||||| |||||| || |||| ||||||||||||||||||||| ||||    
T  5254609 tatgcggcaccatttgtatcta-tttcgtccataccttacgtcttgcgaggatgacgtttaataatatttgctgatt 5254684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14436992 - 14436916
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || ||| || || | ||| ||||||||||||||||| ||||    
T  14436992 tatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgctgatt 14436916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 15457818 - 15457893
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgat 76  Q
    |||||||||| |||||||||||||||||||||||   | ||| || || | ||||||||||||| |||||||||||    
T  15457818 tatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaatattatttgccgat 15457893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 387532 - 387566
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatac 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  387532 tatgcggcaccatttgtatcttgtttcgtccatac 387566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43248952 - 43248882
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttg 71  Q
    |||||||| | |||| ||||||||||||||||||| ||  || ||  ||| ||||||||||||||||||||    
T  43248952 tatgcggcgccatttatatcttgtttcgtccataccttgtgtcttgtgaggatgacgtttaataatatttg 43248882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14106247 - 14106172
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||| ||||||||||||| |||||  | ||| || |||| ||| ||||||||||||||||| ||||    
T  14106247 tatgcggcaccatttctatcttgtttcgt-cataccctgcgtcttgcgaggatggcgtttaataatatttgctgatt 14106172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14405555 - 14405630
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||| |||| |||||||||||||| ||| ||||| |||||| || |  |||| |||||||||||||||||| ||||    
T  14405555 tatgcagcaccatttgtatcttgtt-cgttcataccttacgtcttgcaggaataacgtttaataatatttgctgatt 14405630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7002543 - 7002619
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||||||||  ||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||    
T  7002543 tatgcggcaccttttgtatcttgtttcgtccataccttacattttgcgaggatgacgtttaataatatttgccgatt 7002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30685649 - 30685573
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || ||| || || | ||||||||||||||||||||||||||    
T  30685649 tatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 30685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 46814190 - 46814121
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatattt 70  Q
    |||||||||| |||||||||||||||||||||||| |||||| || |||| ||| |||||||||||||||    
T  46814190 tatgcggcaccatttgtatcttgtttcgtccataccttacgtcttgcgaggatggcgtttaataatattt 46814121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31584764 - 31584689
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||| ||||| || ||| || |||| |||  |||||||||||||||||||||    
T  31584764 tatgcggcaccatttgtatcttgtttcgt-cataccttgcgtcttgcgaggatggtgtttaataatatttgccgatt 31584689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 40216231 - 40216155
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||| ||||||||||  |  ||| || |||| ||||||||||||||||||||| ||||    
T  40216231 tatgcggcaccatttgtatcttgattcgtccatatctggcgtcttgcgaggatgacgtttaataatatttgctgatt 40216155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41920813 - 41920889
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||| |||| |||||||| || |||||||||||| |||||| || ||   |||||||||||||||||||| |||||    
T  41920813 tatgcagcacaatttgtattttatttcgtccataccttacgtcttgcggagatgacgtttaataatatttgtcgatt 41920889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27031566 - 27031496
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttg 71  Q
    |||||||||| |||| ||| ||||| ||||||||  || ||| || |||| ||||||||||||||||||||    
T  27031566 tatgcggcaccatttatatattgttccgtccatatcttgcgtcttgcgaggatgacgtttaataatatttg 27031496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6804894 - 6804969
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| ||||||||||| |||||||||||| || ||| || || | ||  ||||||||||||||| ||||||    
T  6804894 tatgcggcaccatttgtatctt-tttcgtccataccttgcgtcttgcggggatagcgtttaataatatttaccgatt 6804969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 19274 - 19349
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgat 76  Q
    |||||||||| ||||||||||||||||||||||||  | ||| || |||| |||||||||||||||||||||||||    
T  19274 tatgcggcaccatttgtatcttgtttcgtccataccatgcgtcttgcgaggatgacgtttaataatatttgccgat 19349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35815969 - 35815896
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccg 74  Q
    |||| ||||| |||||||||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||    
T  35815969 tatgtggcaccatttgtatcttgtttcgtccataccttgcgttttgcgaggatggcgtttaataatatttgccg 35815896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 31207083 - 31207011
Alignment:
Q  5 cggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||| |||||||||||||||||||||||| || ||| || |||| ||| ||||||||||||||||||||||    
T  31207083 cggcaccatttgtatcttgtttcgtccataccttgcgtcttgcgaggatggcgtttaataatatttgccgatt 31207011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12898001 - 12897925
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||  || | | || || | ||||||||||||||||||||||||||    
T  12898001 tatgcggcaccatttgtatcttgtttcgtccatatcttgcatcttgcggggatgacgtttaataatatttgccgatt 12897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 16457200 - 16457128
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgcc 73  Q
    |||| ||||| |||||||||||||||||||||||| |||||| || |  | ||||||||||||||||||||||    
T  16457200 tatgtggcaccatttgtatcttgtttcgtccataccttacgtcttgcagggatgacgtttaataatatttgcc 16457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 20138782 - 20138858
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || ||| || || | ||| ||||||||||||||| ||||||    
T  20138782 tatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttaccgatt 20138858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22773977 - 22774053
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||| ||||||||||||| || ||| || || | ||| ||||||||||||||||||||||    
T  22773977 tatgcggcaccatttgtatctagtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgatt 22774053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 24995117 - 24995044
Alignment:
Q  4 gcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||||| |||||||||||||||||||||||| || ||| ||||| | ||| |||| |||||||||||| ||||    
T  24995117 gcggcaccatttgtatcttgtttcgtccataccttgcgtcttacggggatggcgttcaataatatttgctgatt 24995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 9659474 - 9659534
Alignment:
Q  17 tatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||||||||||||||||| || ||| || || | ||||||||||||||||||||||||||    
T  9659474 tatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 9659534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 15821101 - 15821026
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||| ||||||||| || ||| || | || ||||||||||||||||||||| ||||    
T  15821101 tatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgc-aggatgacgtttaataatatttgctgatt 15821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32066010 - 32065934
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || | | || ||   ||| ||||||||||||||||||||||    
T  32066010 tatgcggcaccatttgtatcttgtttcgtccataccttgcatcttgcggtgatggcgtttaataatatttgccgatt 32065934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 38577511 - 38577441
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttg 71  Q
    |||||||||  |||||||| ||||||||| |||||||||| | || ||  |||||||||||||||||||||    
T  38577511 tatgcggcatcatttgtatattgtttcgttcatacattacatcttgcggaaatgacgtttaataatatttg 38577441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9519862 - 9519896
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatac 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  9519862 tatgcggcaccatttgtatcttgtttcgtccatac 9519896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37986580 - 37986508
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgcc 73  Q
    ||||| |||| |||||||||||||||||||| | | || ||| || || | ||||| ||||||||||||||||    
T  37986580 tatgcagcaccatttgtatcttgtttcgtccgtgccttgcgtcttgcggggatgacatttaataatatttgcc 37986508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 3254317 - 3254389
Alignment:
Q  5 cggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||| |||||||||||||||||||||||| || ||| || || | ||||||||||||||||||||||||||    
T  3254317 cggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 3254389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3117850 - 3117922
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgcc 73  Q
    ||||| |||| ||||||||||| |||||||||||| |||||| || |  ||||||||||||||||||||||||    
T  3117850 tatgctgcaccatttgtatcttatttcgtccataccttacgtcttgcaggaatgacgtttaataatatttgcc 3117922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 15132554 - 15132489
Alignment:
Q  12 atttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||||||||||||| |||||||| |||||| || |||  ||| ||||||||||||||||| ||||    
T  15132554 atttgtatcttgttttgtccataccttacgtcttgcgatgatggcgtttaataatatttgctgatt 15132489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33697822 - 33697789
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccata 34  Q
    |||||||||| |||||||||||||||||||||||    
T  33697822 tatgcggcaccatttgtatcttgtttcgtccata 33697789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15944355 - 15944431
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||| ||| ||||||||||| ||  |||||||| || ||| ||||  | ||| ||||||||||||||||||||||    
T  15944355 tatgcgacaccatttgtatcttcttctgtccataccttgcgtcttacagggatggcgtttaataatatttgccgatt 15944431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2392228 - 2392152
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || ||| || || | ||||||||||||||||||| ||||||    
T  2392228 tatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattttccgatt 2392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2393991 - 2393915
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || ||| || || | ||||||||||||||||||| ||||||    
T  2393991 tatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattttccgatt 2393915  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19176862 - 19176938
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| ||||||||| |||||||||||||| || ||| || |  ||||||||||||||||||||||||||||    
T  19176862 tatgcggcaccatttgtatcatgtttcgtccatactttgcgtcttgcaggaatgacgtttaataatatttgccgatt 19176938  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 5556943 - 5557011
Alignment:
Q  9 actatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||||||||||||||||||| || || |||| |  ||||  |||||||||||||||||||||||||||    
T  5556943 actatttgtatcttgtttcgttcaaaccttacatcctacggaaatgacgtttaataatatttgccgatt 5557011  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21343703 - 21343779
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| ||  || || |  | |||||||||||||||||||| |||||    
T  21343703 tatgcggcaccatttgtatcttgtttcgtccataccttgtgtcttgccgggatgacgtttaataatatttgtcgatt 21343779  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 47236054 - 47236130
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || ||| || |  | ||| ||||||||||||||||| ||||    
T  47236054 tatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcagggatggcgtttaataatatttgctgatt 47236130  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 50305299 - 50305223
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||| ||| |||||||||||||| ||||||||| || ||| || || ||||| ||||||||||||||||| ||||    
T  50305299 tatgcgacaccatttgtatcttgttccgtccataccttgcgtcttgcgggaatggcgtttaataatatttgctgatt 50305223  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 53248256 - 53248332
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||| ||| ||||||||||||||| |||||||| |||||  || || | |||||||||||||||||||| |||||    
T  53248256 tatgcgacaccatttgtatcttgttttgtccataccttacgccttgcggggatgacgtttaataatatttgtcgatt 53248332  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40023294 - 40023224
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttg 71  Q
    |||||||||  ||||||||||||||||||||||||| | ||| || || | |||| |||||||||||||||    
T  40023294 tatgcggcatcatttgtatcttgtttcgtccatacaatgcgtcttgcggggatgatgtttaataatatttg 40023224  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 50560012 - 50560070
Alignment:
Q  13 tttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttg 71  Q
    ||||||||||||||||||||||  || ||| || |||| ||||||||||||||||||||    
T  50560012 tttgtatcttgtttcgtccatatcttgcgtattgcgaggatgacgtttaataatatttg 50560070  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34475483 - 34475407
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||| ||||| |||||||||||||||||| |||||  | ||| || || | ||||||||||||||||| ||||||||    
T  34475483 tatggggcaccatttgtatcttgtttcgttcataccctgcgtcttgcggggatgacgtttaataatatgtgccgatt 34475407  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 45164209 - 45164285
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| ||||||||||||||| |||||||| || | | || || | || | |||||||||||||||||||||    
T  45164209 tatgcggcaccatttgtatcttgtttagtccataccttgcatcttgcggggataatgtttaataatatttgccgatt 45164285  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30352164 - 30352130
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatac 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  30352164 tatgcggcaccatttgtatcttgtttcgtccatac 30352130  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37158662 - 37158735
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccga 75  Q
    |||||||||| ||||||||| |||||||||||||| || ||| || || | ||| ||||| ||||||||||||||    
T  37158662 tatgcggcaccatttgtatcctgtttcgtccataccttgcgtcttgcggggatggcgttt-ataatatttgccga 37158735  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9583778 - 9583710
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatt 69  Q
    |||||||||| ||||||||||||||||||| |||| ||  || |||||   ||| ||||||||||||||    
T  9583778 tatgcggcaccatttgtatcttgtttcgtctataccttgtgtcttacggagatggcgtttaataatatt 9583710  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 30167277 - 30167212
Alignment:
Q  12 atttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||||||||||||||||| || ||| || |||| |||||||||||||||||||| |||||    
T  30167277 atttgtatcttgtttcgtccataccttgcgtcttgcgaggatgacgtttaataatatttgtcgatt 30167212  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 35329363 - 35329439
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    ||||| |||| |||||||||||||||||||||||| |||||| || || | ||| |||||| |||||||||||||||    
T  35329363 tatgcagcaccatttgtatcttgtttcgtccataccttacgtcttgcggggatggcgtttactaatatttgccgatt 35329439  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27555656 - 27555579
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttac-gagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||||||||||||| || ||| || | | | ||| ||||||||||||||||||||||    
T  27555656 tatgcggcacaatttgtatcttgtttcgtccataccttgcgtcttgcgggggatggcgtttaataatatttgccgatt 27555579  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46698504 - 46698428
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| ||||||||||||||||| |||||| || ||| || |  | ||||||||||||||||||||| ||||    
T  46698504 tatgcggcaccatttgtatcttgtttcgaccataccttgcgtctttcatggatgacgtttaataatatttgctgatt 46698428  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 35121303 - 35121337
Alignment:
Q  205 cctttcatatatttctgcactcggttggaaaatgt 239  Q
    |||||||||||||||||||||||||||||||||||    
T  35121303 cctttcatatatttctgcactcggttggaaaatgt 35121337  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2826137 - 2826213
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttac-gagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||||||||||||| ||||||||| || ||| || | ||| ||||||||||||||||||||| ||||    
T  2826137 tatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagag-atgacgtttaataatatttgctgatt 2826213  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35341078 - 35341006
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttac--gagaatgacgtttaataatatttg 71  Q
    |||| ||||| ||||||||||||||||||||||||||| ||| || |  | | ||||||||||||||||||||    
T  35341078 tatgtggcaccatttgtatcttgtttcgtccatacattgcgtcttgcggggggatgacgtttaataatatttg 35341006  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7703043 - 7703118
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| ||||||||||| |||| ||||||| ||  || || || | ||||||||||||||||||||||||||    
T  7703043 tatgcggcaccatttgtatctt-tttcatccataccttgtgtcttgcggggatgacgtttaataatatttgccgatt 7703118  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49528442 - 49528486
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgtttt 45  Q
    |||||||||| |||||||||||||||||||||||| ||| |||||    
T  49528442 tatgcggcaccatttgtatcttgtttcgtccataccttatgtttt 49528486  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4306061 - 4306136
Alignment:
Q  1 tatgcggcactatttgtatcttgtttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||| |||| |||||| |||||| ||||| || ||| || || | ||||| ||||||||||||||||||||    
T  4306061 tatgcggcaccatttatatctt-tttcgttcataccttgcgtcttccggggatgacatttaataatatttgccgatt 4306136  T

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Target: scaffold0068 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 35526 - 35473
Alignment:
Q  24 tttcgtccatacattacgttttacgagaatgacgtttaataatatttgccgatt 77  Q
    |||||||||||| |||||| ||||| | |||||||| |||||||||||||||||    
T  35526 tttcgtccataccttacgtcttacggggatgacgttcaataatatttgccgatt 35473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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