View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1404_low_1 (Length: 766)
Name: NF1404_low_1
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 189 - 543
Target Start/End: Complemental strand, 29949293 - 29948935
Alignment:
| Q |
189 |
ggatgtaagaagagtttgaataaaaagcatgtgaaagtgaagagaaggaaataaagtaatgtagttattattgttgctgaagacatgtctacaattcaag |
288 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29949293 |
ggatgtaagaagtgtttgaataaaaagcatgtgaaagtgaagagaaggaaataaagtaatgtagttattattgttgctgaagacatgtctacaattcaag |
29949194 |
T |
|
| Q |
289 |
taccaagagtgaggagtgagggctataagaaccggtatcatctctaaactagtggtgtgtttgtggatgactggatgtcccaccattttgtataagtgga |
388 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29949193 |
taccaagagtgaggagtgagggctataagaaccggtatcatctctaaacgagtggtgtgtttgtggatgactggatgtcccaccattttgtataagtgga |
29949094 |
T |
|
| Q |
389 |
tgactggatgcccatgactgcatggtatgagtggtggttgagatggatgacgggatatcccatcactttgtggggatgtcccacccacaatgatttaaat |
488 |
Q |
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|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
29949093 |
tgactggatgcccatgactgcatggtatgagggatggttgagatggatgacgggatatcccaccactttgttgggatgtcccacccacaatgatttaaat |
29948994 |
T |
|
| Q |
489 |
ataagt-----agagtgttcaaaaagagagtgttgctagtattactctaggtaataatat |
543 |
Q |
| |
|
||||| ||||||||| ||||||||||||| || ||||||| ||||||||||||| |
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|
| T |
29948993 |
ctaagtattagagagtgttc-aaaagagagtgtttttaatattactttaggtaataatat |
29948935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 29949452 - 29949321
Alignment:
| Q |
30 |
gttggaacttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaaggtttc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
29949452 |
gttggaacttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttacctaataggtgaaggtttc |
29949353 |
T |
|
| Q |
130 |
ctattattggtagtgttggtggacctggtggc |
161 |
Q |
| |
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| |||||||||||||||||||||||||||||| |
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|
| T |
29949352 |
caattattggtagtgttggtggacctggtggc |
29949321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 29999319 - 29999188
Alignment:
| Q |
30 |
gttggaacttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaaggtttc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
29999319 |
gttggaacttgaccaagttgtaaggacatgattggaccatatcttttggagagtgattgaagtgttctatgtggaagtttacctaacatgtgaaggtttc |
29999220 |
T |
|
| Q |
130 |
ctattattggtagtgttggtggacctggtggc |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
29999219 |
ctattattggtagtgttggtggacctggtggc |
29999188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 30005758 - 30005627
Alignment:
| Q |
29 |
agttggaacttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaaggttt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
30005758 |
agttggaacttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagattt |
30005659 |
T |
|
| Q |
129 |
cctattattggtagtgttggtggacctggtgg |
160 |
Q |
| |
|
|| |||||||||||||||| |||||||||||| |
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|
| T |
30005658 |
ccaattattggtagtgttgatggacctggtgg |
30005627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 30071226 - 30071357
Alignment:
| Q |
29 |
agttggaacttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaaggttt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
30071226 |
agttggaacttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagattt |
30071325 |
T |
|
| Q |
129 |
cctattattggtagtgttggtggacctggtgg |
160 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||| |
|
|
| T |
30071326 |
ccaattattggtagtgatggtggacctggtgg |
30071357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 29963010 - 29962880
Alignment:
| Q |
30 |
gttggaacttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaaggtttc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
29963010 |
gttggaacttgaccaagttgtaaggacatgattgaaccatattttttggacagtgattgaagtgttctatgtggaagtttacctaacatgtgaaggtttc |
29962911 |
T |
|
| Q |
130 |
ctattattggtagtgttggtggacctggtgg |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
29962910 |
ctattattggtagtgttggtggacctggtgg |
29962880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 30011788 - 30011918
Alignment:
| Q |
30 |
gttggaacttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaaggtttc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
30011788 |
gttggaacttgaccaagttgtaaggacatgattgaaccatattttttggacagtgattgaagtgttctatgtggaagtttacctaacatgtgaaggtttc |
30011887 |
T |
|
| Q |
130 |
ctattattggtagtgttggtggacctggtgg |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30011888 |
ctattattggtagtgttggtggacctggtgg |
30011918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 29990615 - 29990485
Alignment:
| Q |
30 |
gttggaacttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaaggtttc |
129 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29990615 |
gttggaacttgtccaagttgtaaagacataattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaagatttc |
29990516 |
T |
|
| Q |
130 |
ctattattggtagtgttggtggacctggtgg |
160 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
29990515 |
ctattattggtagtgttggtggacatggtgg |
29990485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 30045403 - 30045527
Alignment:
| Q |
36 |
acttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaaggtttcctatta |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
30045403 |
acttgaccaagttgtaaggacatgattggaccatattttttggagagtgactgaagtgttctatgtggaagggtgcctaatatgtgaaggttccctatta |
30045502 |
T |
|
| Q |
136 |
ttggtagtgttggtggacctggtgg |
160 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30045503 |
ttggtagtgttggtggacctggtgg |
30045527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 36 - 161
Target Start/End: Complemental strand, 29943778 - 29943653
Alignment:
| Q |
36 |
acttgaccaagttgtaaggacatgattggaccatattttttggagagtgattgaagtgttctatgtggaagtttgcctaatatgtgaaggtttcctatta |
135 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |
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|
| T |
29943778 |
acttgacctagttgtaaggacatgattggaccatattgtttggagagtgattgaagtgttctatgtggaagggtgcctaatatgtggaggtttccgatta |
29943679 |
T |
|
| Q |
136 |
ttggtagtgttggtggacctggtggc |
161 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
29943678 |
ttggtagtgatggtggacctggtggc |
29943653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 29999160 - 29999108
Alignment:
| Q |
189 |
ggatgtaagaagagtttgaataaaaagcatgtgaaagtgaagagaaggaaata |
241 |
Q |
| |
|
||||||||||||||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
29999160 |
ggatgtaagaagagtttgaataaaaggtatatgaaagtgaagagaaggaaata |
29999108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 29990450 - 29990406
Alignment:
| Q |
195 |
aagaagagtttgaataaaaagcatgtgaaagtgaagagaaggaaa |
239 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
29990450 |
aagaatagtttgaatagaaagtatgtgaaagtgaagagaaggaaa |
29990406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 12095349 - 12095400
Alignment:
| Q |
591 |
gtatcgttttgatcccataattaatttttggtccatttgagtcctttaagtt |
642 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
12095349 |
gtatcgctttggtcccataattaaattttggtccgtttaagtcctttaagtt |
12095400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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