View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_100 (Length: 340)

Name: NF1404_low_100
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_100
NF1404_low_100
[»] chr2 (1 HSPs)
chr2 (30-269)||(19495944-19496183)
[»] scaffold0363 (1 HSPs)
scaffold0363 (105-214)||(15499-15608)
[»] chr8 (9 HSPs)
chr8 (113-214)||(13164380-13164481)
chr8 (105-214)||(14403245-14403354)
chr8 (105-211)||(5568675-5568781)
chr8 (105-206)||(5562348-5562449)
chr8 (105-213)||(5624537-5624645)
chr8 (105-212)||(5598440-5598547)
chr8 (105-212)||(5636728-5636835)
chr8 (177-271)||(12190405-12190502)
chr8 (177-271)||(12434833-12434930)
[»] chr6 (1 HSPs)
chr6 (300-334)||(913229-913263)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 19496183 - 19495944
Alignment:
Q  30 gaatctgctttgtatcgaaactatttctggacctacacagactaccgcatcaaaagtggaaaaaatatttgggacgaacttgtgaaagcaatgaatgaat 129  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  19496183 gaatctgctttgtgtcgaaactatttcttgacctacacagactaccgcatcaaaagtggaaaaaaaatctgggacgaacttgtgaaagcaatgaatgaat 19496084  T
Q  130 caactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataatgaagtgtagaagaaaaagtggaca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19496083 caactctttttctagtggtgttctcagagaactacgcggattccagttggtgtttggatgaacttgttgaaataatgaagtgtagaagaaaaagtagaca 19495984  T
Q  230 ggttgttgttcttcctgtgttctaccgtattgatccttca 269  Q
     |||||||||||||||||||||||||||||||| ||||||    
T  19495983 agttgttgttcttcctgtgttctaccgtattgaaccttca 19495944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 15608 - 15499
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    |||||||| |||||||| ||  |||| ||||||||||| || |||||||| ||||||||||||  ||| |  ||||||||| | ||||| ||||||||||    
T  15608 gaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataa 15509  T
Q  205 tgaagtgtag 214  Q
    || |||||||    
T  15508 tggagtgtag 15499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 13164380 - 13164481
Alignment:
Q  113 gaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataatgaagtgt 212  Q
    ||||||||| |||||||| ||||||||||| || ||||||||||||||||||||   ||| |  ||||||||| | ||||| ||| |||||||| |||||    
T  13164380 gaaagcaatcaatgaatccactctttttcttgtcgtgttctcagagaactacgcattttcaacatggtgtttgaacgaactagttcaaataatggagtgt 13164479  T
Q  213 ag 214  Q
    ||    
T  13164480 ag 13164481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 14403245 - 14403354
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    |||||||| |||||||| ||  |||| ||||||||||| || |||||||| ||||||||||||  ||| |  ||||||||| | ||||| ||||||||||    
T  14403245 gaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataa 14403344  T
Q  205 tgaagtgtag 214  Q
    || |||||||    
T  14403345 tggagtgtag 14403354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 5568675 - 5568781
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    ||||||| ||||||||| ||  |||||||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| |||||||||||||| |||    
T  5568675 gaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacatggtgtttgaatgaacttgttgaactaa 5568774  T
Q  205 tgaagtg 211  Q
    || ||||    
T  5568775 tggagtg 5568781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 5562348 - 5562449
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    ||||||||||| ||||||||  |||| ||| | ||||| || |||||||| ||||||||||||  ||| |  ||||||||| ||||||| ||| ||||||    
T  5562348 gaacttgtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcggagaactacgcgtcttcaacatggtgtttgaatgaactcgttcaaataa 5562447  T
Q  205 tg 206  Q
    ||    
T  5562448 tg 5562449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 5624537 - 5624645
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    ||||||||||||||||| ||  |||| ||||| | ||| ||||||||||| ||||||||||||   || |  ||||||||| | ||||| ||| ||||||    
T  5624537 gaacttgtgaaagcaatcaaacaatccactctgtatcttgtggtgttctcggagaactacgcgtcatcaacatggtgtttgaacgaactcgttcaaataa 5624636  T
Q  205 tgaagtgta 213  Q
    || ||||||    
T  5624637 tggagtgta 5624645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 5598547 - 5598440
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| | ||||| ||| ||||||    
T  5598547 gaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataa 5598448  T
Q  205 tgaagtgt 212  Q
    || |||||    
T  5598447 tggagtgt 5598440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 5636728 - 5636835
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| | ||||| ||| ||||||    
T  5636728 gaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataa 5636827  T
Q  205 tgaagtgt 212  Q
    || |||||    
T  5636828 tggagtgt 5636835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 12190502 - 12190405
Alignment:
Q  177 tggtgtttggatgaacttgttgaaataatgaagtgtagaagaaa--aagtggacag-gttgttgttcttcctgtgttctaccgtattgatccttcaca 271  Q
    ||||||||| ||||||| ||||||||||||||||| | || |||  | |  ||||  ||||||||| ||||||||||||||||||| || ||||||||    
T  12190502 tggtgtttgaatgaactcgttgaaataatgaagtgcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaaccttcaca 12190405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 12434930 - 12434833
Alignment:
Q  177 tggtgtttggatgaacttgttgaaataatgaagtgtagaagaaa--aagtggacag-gttgttgttcttcctgtgttctaccgtattgatccttcaca 271  Q
    ||||||||| ||||||| ||||||||||||||||| | || |||  | |  ||||  ||||||||| ||||||||||||||||||| || ||||||||    
T  12434930 tggtgtttgaatgaactcgttgaaataatgaagtgcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaaccttcaca 12434833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 913263 - 913229
Alignment:
Q  300 caagaagaaaggcattgatgatagtatataacaac 334  Q
    |||||||||||||||||||||||||||||||||||    
T  913263 caagaagaaaggcattgatgatagtatataacaac 913229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University