View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_102 (Length: 336)
Name: NF1404_low_102
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_102 |
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| [»] scaffold0201 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 91 - 243
Target Start/End: Original strand, 42809532 - 42809684
Alignment:
| Q |
91 |
aacctcctctctccagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaaggaatgttacgtggaagaagaagaagaata |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42809532 |
aacctcctctctccagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaatgaatgttacgtggaagaagaagaagaata |
42809631 |
T |
|
| Q |
191 |
ttgagatgaaggaatgagtaatgttacaattatggaaattcatgtgatgttga |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42809632 |
ttgagatgaaggaatgagtaatgttacaattatggaaattcatgtgatgttga |
42809684 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 243
Target Start/End: Original strand, 49343231 - 49343453
Alignment:
| Q |
38 |
gaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctcc-------agatctcgttcttctcttcgtgggtt |
130 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||||||| |||||| || |
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| T |
49343231 |
gaattccacttctttctctcttaaccggtgcgccacccagtacaacaaccaccaagctcctctcttctgatttcagatctcgttcttctcctcgtggatt |
49343330 |
T |
|
| Q |
131 |
cttttcaaagttatggattccatggaaaaa--------ggaatgttacgtggaa--gaagaagaagaatattgagatgaaggaatgagtaatgttacaat |
220 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
49343331 |
cttttcaaagctatggattccatggaaaaaaggaatgaggaatgttagattgaaacgaagatgaagaatattgagatgaaggaatgaggaatgttacaat |
49343430 |
T |
|
| Q |
221 |
tatggaaattcatgtgatgttga |
243 |
Q |
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| T |
49343431 |
tctggaaattcatgtgatgttga |
49343453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 42809441 - 42809520
Alignment:
| Q |
25 |
attgggaattttcgaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctcc |
104 |
Q |
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|||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42809441 |
attgggcatttgcgaattccacttctatctctctcaaccggtgcgccacccagtacaacaaccaccaacctcctctctcc |
42809520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 41873351 - 41873201
Alignment:
| Q |
92 |
acctcctctctccagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaaggaatgttacgtggaagaagaagaagaatat |
191 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41873351 |
acctcctctctccagatctcgttcttctcttcgtgg-ttcttttcaaagttatggattccatggaaaaaggaatgttacggggaagaagaagaagaatat |
41873253 |
T |
|
| Q |
192 |
tgagatgaaggaatgagtaatgttacaattatggaaattcatgtgatgttga |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41873252 |
tgagatgaaggaatgagtaatgttacaattatggaaattcatgtgatgttga |
41873201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 104 - 243
Target Start/End: Original strand, 14477220 - 14477368
Alignment:
| Q |
104 |
cagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaa-------aggaatgttacgtggaa--gaagaagaagaatattga |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | ||| ||||| |||||||||||| |
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| T |
14477220 |
cagatctcgttcttctcttcgtgggttcttttcaaagctatggattccatggaaaaaggaatgaggaatgttagattgaaacgaagatgaagaatattga |
14477319 |
T |
|
| Q |
195 |
gatgaaggaatgagtaatgttacaattatggaaattcatgtgatgttga |
243 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
14477320 |
gatgaaggaatgaggaatgttacaattttggaaattcatgtgatgttga |
14477368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 41873452 - 41873380
Alignment:
| Q |
32 |
attttcgaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctcc |
104 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
41873452 |
atttgcgaattccacttctatctctcttaaccggtgcgccatccagtacaacaaccaccaacctcctctctcc |
41873380 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 14471467 - 14471531
Alignment:
| Q |
38 |
gaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctct |
102 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||||| |||| |||||||||||||||| |
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| T |
14471467 |
gaattccacttctttctctcttaaccggtgcaccacctagtaccacaaccaccaacctcctctct |
14471531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 91 - 243
Target Start/End: Original strand, 21872 - 22027
Alignment:
| Q |
91 |
aacctcctctctccagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaaggaatgttacgtg---gaagaagaagaaga |
187 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21872 |
aacctcctctctctagatctcgttcttctcttcgtgggttctttttaaagttatggattccatggaaaaaggaatgttacgtggaagaagaagaagaaga |
21971 |
T |
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| Q |
188 |
atattgagatgaaggaatgagtaatgttacaattatggaaattcatgtgatgttga |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21972 |
atattgagatgaaggaatgagtaatgttacaattatggaaattcatgtgatgttga |
22027 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 21774 - 21839
Alignment:
| Q |
38 |
gaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21774 |
gaattccacttctatctctcttaaccggtgcgccacccagtacaacaaccaccaacctcctctctc |
21839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 243
Target Start/End: Complemental strand, 4299557 - 4299335
Alignment:
| Q |
38 |
gaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctcc-------agatctcgttcttctcttcgtgggtt |
130 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| ||||||||||||||| |
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| T |
4299557 |
gaattccacttctttctcttttaaccggtgcgccacccagtaccacaaccaccaacctcctctcttccaatttcagatctcgtttttctcttcgtgggtt |
4299458 |
T |
|
| Q |
131 |
cttttcaaagttatggattccatggaaaaa--------ggaatgttacgtggaa--gaagaagaagaatattgagatgaaggaatgagtaatgttacaat |
220 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
4299457 |
cttttcaaagctatggattccatggaaaaaaggaatgaggaatgttagattgaaacgaagatgaagaatattgagatgaaggaatgaggaatgttacaat |
4299358 |
T |
|
| Q |
221 |
tatggaaattcatgtgatgttga |
243 |
Q |
| |
|
| ||||||||||||||||||||| |
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| T |
4299357 |
tctggaaattcatgtgatgttga |
4299335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 22114575 - 22114430
Alignment:
| Q |
104 |
cagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaaggaatgttacg----tggaa--gaagaagaagaatattgagat |
197 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| || | | | | ||| ||||| ||||||||||||||| |
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| T |
22114575 |
cagatctcgctcttctcttcgtgggttcttttcaaagctatggattcaatggaaaaaacaaaatgaggaatatagaaacgaagatgaagaatattgagat |
22114476 |
T |
|
| Q |
198 |
gaaggaatgagtaatgttacaattatggaaattcatgtgatgttga |
243 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
22114475 |
gaaggaatgaggaatgttgcaattctggaaattcatgtgatgttga |
22114430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 40509145 - 40509000
Alignment:
| Q |
104 |
cagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaaggaatgttacg----tggaa--gaagaagaagaatattgagat |
197 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| || | | | | ||| ||||| ||||||||||||||| |
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| T |
40509145 |
cagatctcgctcttctcttcgtgggttcttttcaaagctatggattcaatggaaaaaacaaaatgaggaatatagaaacgaagatgaagaatattgagat |
40509046 |
T |
|
| Q |
198 |
gaaggaatgagtaatgttacaattatggaaattcatgtgatgttga |
243 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
40509045 |
gaaggaatgaggaatgttgcaattctggaaattcatgtgatgttga |
40509000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 30964584 - 30964526
Alignment:
| Q |
105 |
agatctcgttcttct-cttcgtgggttcttttcaaagttatggattccatggaaaaagg |
162 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30964584 |
agatctcgttcttcttcttcgtgggttcttttcaaagctatggattccatggaaaaagg |
30964526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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