View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1404_low_105 (Length: 326)
Name: NF1404_low_105
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_105 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 34755217 - 34755508
Alignment:
| Q |
6 |
agaagcaaaggcaattagaataaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagca |
105 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34755217 |
agaaacaaagacaattagaataaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagca |
34755316 |
T |
|
| Q |
106 |
aagtatcaagaaaaactacactctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34755317 |
aagtatcaagaaaaactacactctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgat |
34755416 |
T |
|
| Q |
206 |
aggatcatacttattgaaaatctcgtcaattctcttctcatagtttccaaacttaaacttgttcaatggccatatgaagtttgtaacactat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34755417 |
aggatcatacttattgaaaatctcgtcaattctcttctcatagtttccaaacttaaacttgttcaatggccatatgaagtttgtaacactat |
34755508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 297
Target Start/End: Complemental strand, 34780919 - 34780628
Alignment:
| Q |
6 |
agaagcaaaggcaattagaataaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagca |
105 |
Q |
| |
|
|||| ||||| |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||| ||||||||| |
|
|
| T |
34780919 |
agaaacaaagacaatcagaagaaacttaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagca |
34780820 |
T |
|
| Q |
106 |
aagtatcaagaaaaactacactctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgat |
205 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34780819 |
aagtgtcaagaaaaacaacattctgctcgccatctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgat |
34780720 |
T |
|
| Q |
206 |
aggatcatacttattgaaaatctcgtcaattctcttctcatagtttccaaacttaaacttgttcaatggccatatgaagtttgtaacactat |
297 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
34780719 |
aggatcatacttattgaaaatctcctcagttctcttatcatagtttccaaacttaaacttgttcaaaggccaaataaagtttgtaacactat |
34780628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 27 - 297
Target Start/End: Original strand, 34763214 - 34763484
Alignment:
| Q |
27 |
aaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacac |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
34763214 |
aaactcaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacat |
34763313 |
T |
|
| Q |
127 |
tctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaat |
226 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34763314 |
tctgctcgccttctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaat |
34763413 |
T |
|
| Q |
227 |
ctcgtcaattctcttctcatagtttccaaacttaaacttgttcaatggccatatgaagtttgtaacactat |
297 |
Q |
| |
|
||| ||| ||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
34763414 |
ctcctcagttctcttatcatagtttccaaacttaaacttgttcaaaggccaaataaagtttgtaacactat |
34763484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University