View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_107 (Length: 323)
Name: NF1404_low_107
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_107 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 2623560 - 2623866
Alignment:
| Q |
17 |
ttgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctcttcaagggat |
116 |
Q |
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||||||||||||||||||||| | || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
2623560 |
ttgatgctggaaaatcgacagctctggtagggaaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgatccacttgaagggat |
2623659 |
T |
|
| Q |
117 |
agtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgtttggtggtacc |
216 |
Q |
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|||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2623660 |
agtgacaattgatggcagagacataaaaacttataatctaaggtcattaaggaaacacattgcacttgtgagtcaagaaccaacattgtttggtggtacc |
2623759 |
T |
|
| Q |
217 |
ataaaagaaaatattgtatatggagcatatgatgataaagttgatcagagtgagattatagaggcttcaaaggctgcaaatgctcacgatttcatatcaa |
316 |
Q |
| |
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|||||||||||||||| ||||||| |||||| |||| | |||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
2623760 |
ataaaagaaaatattgcatatggatcatatggtgatcaggttgatgagagtgaaattatagaggcatcaaaggctgcaaatgctcatgatttcatatcaa |
2623859 |
T |
|
| Q |
317 |
gcttaaa |
323 |
Q |
| |
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||||||| |
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| T |
2623860 |
gcttaaa |
2623866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 2596823 - 2596507
Alignment:
| Q |
7 |
tcgaataatattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctc |
106 |
Q |
| |
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|||| ||| |||||||| ||||||||||| | |||| | ||||||||||||||||| ||||| || || ||||||||||||||||| ||||||||| | |
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| T |
2596823 |
tcgattaaaattgatgcaggaaaatcgacggctttggtaggggaaagtggttctggaaaatcgacaattataggactaattgagagattctatgatccat |
2596724 |
T |
|
| Q |
107 |
ttcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgtt |
206 |
Q |
| |
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|| |||||||||||||||||||||| || |||||||| || |||||| || | |||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
2596723 |
ttaaagggatagtgacaattgacggtagagacataaagacatataatctacgatcattaaggaaacatattgcacttgtgagtcaagaaccaacattgtt |
2596624 |
T |
|
| Q |
207 |
tggtggtaccataaaagaaaatattgtatatggagcatatgatgataaagttgatcagagtgagattatagaggcttcaaaggctgcaaatgctcacgat |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2596623 |
tggtggtaccataaaagaaaatattgtatatggagcatatgatgataaagttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcacgat |
2596524 |
T |
|
| Q |
307 |
ttcatatcaagcttaaa |
323 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
2596523 |
ttcatatcaagcttaaa |
2596507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 2592006 - 2592322
Alignment:
| Q |
7 |
tcgaataatattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctc |
106 |
Q |
| |
|
|||| ||| |||||||| |||||||| |||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
2592006 |
tcgattaaaattgatgccggaaaatcaacagcgttggtaggagaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgatccac |
2592105 |
T |
|
| Q |
107 |
ttcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgtt |
206 |
Q |
| |
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|| ||||||||||||||||||| || ||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2592106 |
ttaaagggatagtgacaattgatggtagggacataaaaatttataatctaaggtcactaaggaaacacattgcacttgtgagtcaagaaccaacattgtt |
2592205 |
T |
|
| Q |
207 |
tggtggtaccataaaagaaaatattgtatatggagcatatgatgataaagttgatcagagtgagattatagaggcttcaaaggctgcaaatgctcacgat |
306 |
Q |
| |
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| |||||||||| ||||||||||||| ||||||| ||||||||||||| |||||| | ||||| ||||||||||| |||||||||||||||||||| ||| |
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| T |
2592206 |
tagtggtaccatcaaagaaaatattgcatatggatcatatgatgataaggttgatgaaagtgaaattatagaggcatcaaaggctgcaaatgctcatgat |
2592305 |
T |
|
| Q |
307 |
ttcatatcaagcttaaa |
323 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
2592306 |
ttcatatcaagcttaaa |
2592322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 2440069 - 2440376
Alignment:
| Q |
16 |
attgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctcttcaaggga |
115 |
Q |
| |
|
||||| || |||||||| || | |||| | ||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||| | ||| |||||| |
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|
| T |
2440069 |
attgacgccggaaaatcaacggctttggttggggaaagtggttctggaaaatcgacaatcataggactaattgagagattctatgatccacttaaaggga |
2440168 |
T |
|
| Q |
116 |
tagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgtttggtggtac |
215 |
Q |
| |
|
|||||||| |||| || || |||||||||||||||||| || | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
2440169 |
tagtgacagttgatggtagagacataaaaacttataatctacgatcattaaggaaacatattgcacttgtgagtcaagaaccaacattgtttggtggtac |
2440268 |
T |
|
| Q |
216 |
cataaaagaaaatattgtatatggagcatatgatgataaagttgatcagagtgagattatagaggcttcaaaggctgcaaatgctcacgatttcatatca |
315 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2440269 |
cataagagaaaatattgtatatggagcatatgatgataaagttgatgagagtgagattatagaggcatcaaaggctgcaaatgctcacgatttcatatca |
2440368 |
T |
|
| Q |
316 |
agcttaaa |
323 |
Q |
| |
|
|||||||| |
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|
| T |
2440369 |
agcttaaa |
2440376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 2569264 - 2568948
Alignment:
| Q |
7 |
tcgaataatattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctc |
106 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||| | ||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||| | | |
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|
| T |
2569264 |
tcgattaaaattgatgctggaaaatcgacagctttggtaggggaaagtggttctggaaaatcaacaatcataggacttattgaaagattctatgatccac |
2569165 |
T |
|
| Q |
107 |
ttcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgtt |
206 |
Q |
| |
|
|| ||||||||||||||||||| || || |||||||| || |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2569164 |
ttaaagggatagtgacaattgatggtagagacataaagacatataatctaaggtcattaagggaacacattgcacttgtgagtcaagaaccaacattgtt |
2569065 |
T |
|
| Q |
207 |
tggtggtaccataaaagaaaatattgtatatggagcatatgatgataaagttgatcagagtgagattatagaggcttcaaaggctgcaaatgctcacgat |
306 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||||| || |||||||| |||||| ||||||| ||||||||||| ||||||||||||| |||||| ||| |
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| T |
2569064 |
tagtggtaccataagggaaaatattgcatatggagcttacgatgataaggttgatgagagtgaaattatagaggcatcaaaggctgcaagtgctcatgat |
2568965 |
T |
|
| Q |
307 |
ttcatatcaagcttaaa |
323 |
Q |
| |
|
|| |||||||||||||| |
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|
| T |
2568964 |
tttatatcaagcttaaa |
2568948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 2672639 - 2672323
Alignment:
| Q |
7 |
tcgaataatattgatgctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctc |
106 |
Q |
| |
|
|||| ||| |||||||| |||||||| || | |||| | ||||||||||||||||| ||||| || |||||||||||||||||||| |||||||| | | |
|
|
| T |
2672639 |
tcgattaaaattgatgcaggaaaatcaacggctttggtaggggaaagtggttctggaaaatcgacaatcataggactaattgagagattctatgacccac |
2672540 |
T |
|
| Q |
107 |
ttcaagggatagtgacaattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgtt |
206 |
Q |
| |
|
|| |||||||||||||||||||||| || |||||||| || |||||| | |||||||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
2672539 |
ttaaagggatagtgacaattgacggtagagacataaagacatataatctcaggtcattgaggaaacacattgcccttgtgagtcaagaaccaacattgtt |
2672440 |
T |
|
| Q |
207 |
tggtggtaccataaaagaaaatattgtatatggagcatatgatgataaagttgatcagagtgagattatagaggcttcaaaggctgcaaatgctcacgat |
306 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||||| |||||||||| |||||| ||||||||||||||||||| ||||||||| |||||||||| ||| |
|
|
| T |
2672439 |
tagtggtaccataagggaaaatattgcatatggagcttatgatgatacggttgatgagagtgagattatagaggcatcaaaggcttcaaatgctcatgat |
2672340 |
T |
|
| Q |
307 |
ttcatatcaagcttaaa |
323 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
2672339 |
tttatatcaagcttaaa |
2672323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 22 - 321
Target Start/End: Complemental strand, 2641464 - 2641165
Alignment:
| Q |
22 |
gctggaaaatcgacaggtttgatgggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctcttcaagggatagtga |
121 |
Q |
| |
|
|||||||||||||| | |||| | |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| | || |||||||||||| |
|
|
| T |
2641464 |
gctggaaaatcgacggctttggtcggggaaagtggttcagggaaatcaacaatcataggactaattgagagattctatgatccaattaaagggatagtga |
2641365 |
T |
|
| Q |
122 |
caattgacggaagggacataaaaacttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgtttggtggtaccataaa |
221 |
Q |
| |
|
||||||| || || ||||| |||||||| ||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
2641364 |
caattgatggtgaagatataaagtcttataatctaaggtcgttaaggaaacacattgcacttgtaagtcaagaaccaacactgtttggtggtaccataag |
2641265 |
T |
|
| Q |
222 |
agaaaatattgtatatggagcatatgatgataaagttgatcagagtgagattatagaggcttcaaaggctgcaaatgctcacgatttcatatcaagctta |
321 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
2641264 |
ggaaaatattgcatacggagcctatgatgataaagttgatgagagtgagattattcaggcatcaaaggctgcaaatgctcatgatttcatatcaagctta |
2641165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 46 - 323
Target Start/End: Original strand, 2450824 - 2451098
Alignment:
| Q |
46 |
ggggaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgattctcttcaagggatagtgacaattgacggaagggacataaaaa |
145 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||||||||||| || |||||| | | ||||||||||||| ||||| || || || ||||| |
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|
| T |
2450824 |
ggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaagggatagtgacgattgatggtagtgatataaagt |
2450923 |
T |
|
| Q |
146 |
cttataatataaggtcattaaggaaacacattgcactcgtgagtcaagaaccaacattgtttggtggtaccataaaagaaaatattgtatatggagcata |
245 |
Q |
| |
|
|||||||| |||||||||||||||| || ||| |||| ||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
2450924 |
cttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtaccataagggagaatattgcatatggagcat- |
2451022 |
T |
|
| Q |
246 |
tgatgataaagttgatcagagtgagattatagaggcttcaaaggctgcaaatgctcacgatttcatatcaagcttaaa |
323 |
Q |
| |
|
||||||| |||||| |||||||||||||||| || | ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
2451023 |
--atgataaggttgatgagagtgagattatagatgcagctaaggctgcaaatgctcatgattttatatcaagcttaaa |
2451098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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