View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_108 (Length: 323)
Name: NF1404_low_108
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_108 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 86 - 303
Target Start/End: Complemental strand, 40793439 - 40793222
Alignment:
| Q |
86 |
cagagaacactgagagaagtccagcttcagctccaagtgcaatgataaggaggttgaagattaagtaaaggtaactgggcctaagaaaagaaggtaagaa |
185 |
Q |
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| T |
40793439 |
cagagaatactgagagaagtccagcttcagctccaagtgcaatgataaggaggttgaagattaagtaaaggtaactgggcctaagaaaagaaggtaagaa |
40793340 |
T |
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| Q |
186 |
gggtgtgatcacaaggagaaaagctaggaaagagagaactattacttgagatttatcaactttgttcatggtcatgattagagagtgnnnnnnngtagtg |
285 |
Q |
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| T |
40793339 |
gggtgtgatcacaaggagaaaagctaggaaagagagaactattacttgagatttatcaactttgttcatggtcatgattagagagtgaaaaaaagtagtg |
40793240 |
T |
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| Q |
286 |
aaagaaactttgaatgat |
303 |
Q |
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| T |
40793239 |
aaagaaactttgaatgat |
40793222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 40785661 - 40785510
Alignment:
| Q |
109 |
gcttcagctccaagtgcaatgataaggaggttgaagattaagtaaaggtaactgggcctaagaaaagaaggtaagaagggtgtgatcacaaggagaaaag |
208 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| | |||||||| |||||||||||||||||||||| | |
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| T |
40785661 |
gcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaacaagggtgtgatcacaaggagaagaa |
40785562 |
T |
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| Q |
209 |
ctaggaaagagagaactattacttgagatttatcaactttgttcatggtcat |
260 |
Q |
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|| || |||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
40785561 |
gtaagatagagagaactataacttgagatttattaactttgttcatggtcat |
40785510 |
T |
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