View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_109 (Length: 323)
Name: NF1404_low_109
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_109 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 117 - 323
Target Start/End: Complemental strand, 1633168 - 1632962
Alignment:
| Q |
117 |
tgccatataaagaacccttgaagtatgaccattgagctctgccatcttgaccattgaaggatatttccaaagtgttagctgattctgagcaaaaccatga |
216 |
Q |
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| T |
1633168 |
tgccatataaagaactcttgaagtatgaccattgagctctgccatcttgaccattgaaggatatttccaaagtgttagctgattctgagcaaaaccatga |
1633069 |
T |
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| Q |
217 |
gagctgagcaactccctttcattcttgttccatagtagggaacatacctgagacccggtgtcaaccgagttcaggcatgcacctgtgtgtgtattccaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1633068 |
gagctgagcaactccctttcattcttgttccatagtagggaacatacctgagacccggtgtcaaccgagttcaggcatgcacctgtgtgtgtattccaaa |
1632969 |
T |
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| Q |
317 |
acttgat |
323 |
Q |
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||||||| |
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| T |
1632968 |
acttgat |
1632962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 118 - 323
Target Start/End: Complemental strand, 20457117 - 20456912
Alignment:
| Q |
118 |
gccatataaagaacccttgaagtatgaccattgagctctgccatcttgaccattgaaggatatttccaaagtgttagctgattctgagcaaaaccatgag |
217 |
Q |
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||||||| |||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
20457117 |
gccatatgaagaactcttgaagtgtgaccattgagttctgctatcttcaccattgaaggatatttccaaagtgttagctgattctgtgtaaaaccatgag |
20457018 |
T |
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| Q |
218 |
agctgagcaactccctttcattcttgttccatagtagggaacatacctgagacccggtgtcaaccgagttcaggcatgcacctgtgtgtgtattccaaaa |
317 |
Q |
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| T |
20457017 |
agctgagtagctccctctcattcttgttccacaacagggaacatacctgagacccagtgtcgattgagttcaagcatgcacctgtgtgggtattccaaaa |
20456918 |
T |
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| Q |
318 |
cttgat |
323 |
Q |
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|||||| |
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| T |
20456917 |
cttgat |
20456912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 32084739 - 32084675
Alignment:
| Q |
52 |
caatccacccttggtgaaacccaaactcttacagcctccaaaattgacgacattttccacaaatt |
116 |
Q |
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| T |
32084739 |
caatccacccttggtgaaacccaaactcttacggcctccaaaattgacgacattctccacaaatt |
32084675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 43526399 - 43526483
Alignment:
| Q |
118 |
gccatataaagaacccttgaagtatgaccattgagctctgccatcttgaccattgaaggatatttccaaagtgttagctgattct |
202 |
Q |
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| T |
43526399 |
gccatatacagcaccctcgaagtgtgaccattgagatctgccattttcaccatagaaggatacttccaaagggtaagctggttct |
43526483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 16694995 - 16694940
Alignment:
| Q |
130 |
acccttgaagtatgaccattgagctctgccatcttgaccattgaaggatatttcca |
185 |
Q |
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| T |
16694995 |
accctcgaggtatgacccttgagctctgccatcttcaccattgaagaatacttcca |
16694940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 17669231 - 17669176
Alignment:
| Q |
130 |
acccttgaagtatgaccattgagctctgccatcttgaccattgaaggatatttcca |
185 |
Q |
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| T |
17669231 |
accctcgaggtatgacccttgagctctgccatcttcaccattgaagaatacttcca |
17669176 |
T |
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