View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_115 (Length: 317)
Name: NF1404_low_115
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_115 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 185 - 317
Target Start/End: Complemental strand, 53842630 - 53842498
Alignment:
| Q |
185 |
ttctgttcataatcttctttccaaccttccttttatcaacactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttg |
284 |
Q |
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| T |
53842630 |
ttctgttcagaatcttctttccaaccttccttttatcaacactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttg |
53842531 |
T |
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| Q |
285 |
gttggtggtgctagaagatttgaattaactggt |
317 |
Q |
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| T |
53842530 |
gttggtggtgctagaagatttgaattaactggt |
53842498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 53842785 - 53842696
Alignment:
| Q |
30 |
aagatgataaagagtcctacaaaatcaatgtatccatttactaaacggttttctgatattaattggcgtatccttgtgttgataattcct |
119 |
Q |
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| T |
53842785 |
aagatgataaagagtcctacaaaatcaatgtatccatttactaaacggttttctgatattaattggcgtatccttgtgttgataattcct |
53842696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 195 - 313
Target Start/End: Complemental strand, 53844320 - 53844205
Alignment:
| Q |
195 |
aatcttctttccaaccttccttttatcaacactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttggttggtggtg |
294 |
Q |
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| T |
53844320 |
aatcttctgttcaacattccttacatcaacacggctaattc---accttcgaaagatgaattgttacgatccaaaattgcggtgtgtttggttggtggtg |
53844224 |
T |
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| Q |
295 |
ctagaagatttgaattaac |
313 |
Q |
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| T |
53844223 |
ctagaaggttcgaattaac |
53844205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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