View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_12 (Length: 563)
Name: NF1404_low_12
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 28 - 553
Target Start/End: Complemental strand, 44630590 - 44630067
Alignment:
| Q |
28 |
cagttagcttgaattataagctaagtagctcactaatgatgctaaaagtagaaaaagacttaataatcttgatattaatcgccactattaattatgaacc |
127 |
Q |
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| T |
44630590 |
cagttagcttgaattataagctaactagctcactaatgatgctaaaagtagaaaaagacttaataatcttgatattaatcgccactattaattatgaacc |
44630491 |
T |
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| Q |
128 |
atactttaatcgtatattccattgacatacgatatacaattataaagttatagtcagaactacaagctacataatctctttgattaaatcatcagccgaa |
227 |
Q |
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| T |
44630490 |
atattttaatcgtatattccattgacatacgatatacaattataaagttatagtcagaactacaagctacagagtctctttgattaaatcatcagccgaa |
44630391 |
T |
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| Q |
228 |
cagtggaaaaggaataaatacaaagtataagcaatagaaaatacgtcaagaaaaggaaagattattggatggataagattaacgaatataaaaatacatc |
327 |
Q |
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| T |
44630390 |
cagtggaaaaggaatatatacaaagtataagcaatagaaaatacgtcaagaaaaggaaagattattggatggataagattaaccaatataaaaatacatc |
44630291 |
T |
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| Q |
328 |
aa-nnnnnnngttggattccgtcttttgattggttgattnnnnnnnnnnncatttgggattatgagtaaatagtagattaccctcttt-attnnnnnnnn |
425 |
Q |
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| T |
44630290 |
aattttttttgttagattccgtcttttgattggttgatt---aaaaaaaacatttgggattatgagtaaatagtagattaccctctttaattaaaaaaaa |
44630194 |
T |
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| Q |
426 |
ncaagaagtcaattattctctgaaattgcaactttcataaaaaattcccatcaattttgtgaaacttcaaaaacgctggttttgtcaaacatttgtcccc |
525 |
Q |
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| T |
44630193 |
acaagaagtcaattattctctgaaattgcaactttcgtaaaatatttccatcaattttgcgaaacttcaaaaactct-gttttgtcaaacatttgtcccc |
44630095 |
T |
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| Q |
526 |
ctccgtctgtttttgccattacaaccta |
553 |
Q |
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| T |
44630094 |
ctccgtctgtttttgccattacaaccta |
44630067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 28 - 270
Target Start/End: Complemental strand, 44680856 - 44680622
Alignment:
| Q |
28 |
cagttagcttgaattataagctaagtagctcactaatgatgctaaaagtagaaaaagacttaataatcttgatattaatcgccactattaattatgaacc |
127 |
Q |
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|||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
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| T |
44680856 |
cagttagcttaaattataagctaagtaattcaccaatgctgctaaaagtagaaaaagacattgtattcttgatattaatcgccactattaattat----- |
44680762 |
T |
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| Q |
128 |
atactttaatcgtatattccattgacatacgatatacaattataaagttatagtcagaactacaagctacataatctctttgattaaatcatcagccgaa |
227 |
Q |
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| T |
44680761 |
----tttaatcttatattccattgacataatttatacaattataaagttatggataaaattagaagctacagattctctttgattaattcatcagccgga |
44680666 |
T |
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| Q |
228 |
cagtggaaaa-ggaataaatacaaagtataagcaatagaaaata |
270 |
Q |
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| T |
44680665 |
cagtggaaaatgtaatatatacaaagtctaagcataagaaaata |
44680622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 44652032 - 44651937
Alignment:
| Q |
28 |
cagttagcttgaattataagctaagtagctcactaatgatgctaaaagtagaaaaa-gacttaataatcttgatattaatcgccactattaattat |
122 |
Q |
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| T |
44652032 |
cagttagcttaaattataagctaagtaggtcactaatgctgctaaaagtagaaaaatgaaattatattcttgataataatcgcaaccattaattat |
44651937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 44624553 - 44624492
Alignment:
| Q |
76 |
tagaaaaagacttaataatcttgatattaatcgccactattaattatgaaccatactttaat |
137 |
Q |
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| T |
44624553 |
tagaaaaagacattgtaatcttgatattaatcaccactattaattataaaccatattttaat |
44624492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 45348873 - 45348941
Alignment:
| Q |
77 |
agaaaaagacttaataatcttgatattaatcgccactattaattatgaaccatactttaatcgtatatt |
145 |
Q |
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| T |
45348873 |
agaaaaagacattgtaatcttgatattaatcaccactattaattataaaccatattttagttgtatatt |
45348941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 45358352 - 45358420
Alignment:
| Q |
77 |
agaaaaagacttaataatcttgatattaatcgccactattaattatgaaccatactttaatcgtatatt |
145 |
Q |
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| T |
45358352 |
agaaaaagacattgtaatcttgatattaatcaccactattaattataaaccatattttagttgtatatt |
45358420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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