View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_124 (Length: 301)
Name: NF1404_low_124
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_124 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 40793495 - 40793683
Alignment:
| Q |
5 |
aagtttagaaccacaagagaaagaagcacgtggcatagtaaacaatgcatgttctgtctcacaagaacaaaaggaaaagaagcctaaggtggttgaaaaa |
104 |
Q |
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| T |
40793495 |
aagtttagaaccacaagagaaagaagcacgtggcatagtaaacaatgcatgttctgtctcacaagaacaaaaggaaaagaagcctaaggtggttgaaaaa |
40793594 |
T |
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| Q |
105 |
tctacatctgaaaagaagattgtttttgttggtgttacaaaagttgaaaagatgaaaaagtgtccttcaatggcaagtatcttttttat |
193 |
Q |
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| T |
40793595 |
tctacatctgaaaagaagattgtttttgttggtgttacaaaagttgaaaagatgaaaaagtgtccttcaatggcaagtatcttttttat |
40793683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 40785742 - 40785928
Alignment:
| Q |
10 |
tagaaccacaagagaaagaagcacgtggcatagtaaacaatgcatgttctgtctcacaagaacaaaaggaaaagaagcctaaggtggttgaaaaatctac |
109 |
Q |
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| T |
40785742 |
tagaacaagaagagaaagaagcatctaacataataaacaatgcatattctgtttcagaagaacaaaatgaaaacaagcctaaggttgttgaaaaatctgt |
40785841 |
T |
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| Q |
110 |
atctgaaaagaagat------tgtttttgttggtgttacaaaagttgaaaagatgaaaaagtgtccttcaatggcaagtatcttttt |
190 |
Q |
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| T |
40785842 |
atctgagaagaagattgtgtatgttgatgttggtgttagtaaagtggataaggtgaaaaaatgtccttcaatgccaagtattttttt |
40785928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 40793744 - 40793780
Alignment:
| Q |
254 |
ttatggtgttaatggacaagaactttttgcaacagct |
290 |
Q |
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| T |
40793744 |
ttatggtgttaatggacaagaactttttgcaaaagct |
40793780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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