View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_129 (Length: 286)
Name: NF1404_low_129
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_129 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 26335840 - 26336096
Alignment:
| Q |
19 |
ggtgcttcctcttatatgttgtgcagcaaagtatttgggattgagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttg |
118 |
Q |
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| T |
26335840 |
ggtgcttcctcttatatgttgtgcagcaaagtatttgggattgagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttg |
26335939 |
T |
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| Q |
119 |
aagtatgggatgaactttgcatatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtca |
218 |
Q |
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| T |
26335940 |
aagtatgggatgaactttgcatatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtca |
26336039 |
T |
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| Q |
219 |
tccnnnnnnntgtctatactctctcagatatcaccaattctattgcttatgtctctg |
275 |
Q |
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| T |
26336040 |
tccaaaaaaatgtctatactctctcagatatcaccaattctattgcttatgtctctg |
26336096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 26328131 - 26328385
Alignment:
| Q |
21 |
tgcttcctcttatatgttgtgcagcaaagtatttgggattgagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaa |
120 |
Q |
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| T |
26328131 |
tgcttcctcttttatattgtgcagccaagtatttgggattgaaatcaccaatcactcacaatttatggaatactaatacagtgcctaagcatgatttgaa |
26328230 |
T |
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| Q |
121 |
gtatgggatgaactttgcatatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatc |
220 |
Q |
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| T |
26328231 |
gtatgggatgaactttgcctatggtggtacaggtgtatttgaaatatcttctacaggaccaaatgtgacaacacaaatcaattccttaatcaaactcatt |
26328330 |
T |
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| Q |
221 |
cnnnnnnntgtctatactctctcagatatcaccaattctattgcttatgtctctg |
275 |
Q |
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| T |
26328331 |
caagaaaatgtatacactccctcagatatcaccaaatctatagcttatgtctctg |
26328385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 39 - 273
Target Start/End: Original strand, 26322849 - 26323077
Alignment:
| Q |
39 |
gtgcagcaaagtatttgggattgagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaactttgc |
138 |
Q |
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| T |
26322849 |
gtgcagccaagtatttgagattgagatcaccaatccctcacaaattcagg------aacattgtgtctaaacattatttgaagtatgggatgaactttgc |
26322942 |
T |
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| Q |
139 |
atatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccnnnnnnntgtctatact |
238 |
Q |
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| T |
26322943 |
atatggtggcacaggtgtatttgatacatttacttcaggaccaaatatgacagcccaaatcgattccttcaaccaactcattcaagaaaatgtctatact |
26323042 |
T |
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| Q |
239 |
ctctcagatatcaccaattctattgcttatgtctc |
273 |
Q |
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| T |
26323043 |
ccttcagatctcagcaaagctattgcttatgtctc |
26323077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 42224184 - 42224133
Alignment:
| Q |
114 |
atttgaagtatgggatgaactttgcatatggtggtacaggtgtatttgatac |
165 |
Q |
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| T |
42224184 |
atttgaaatatggaatgaactttgcatttggtggtactggtgtgtttgatac |
42224133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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