View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_13 (Length: 558)
Name: NF1404_low_13
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Complemental strand, 47316192 - 47315673
Alignment:
| Q |
11 |
cacagaaaggagatccgatttgttggaagaactctagtagcggcttcatatactgtttaatattatcgttaaatttacaagaggagggagggtaggaagt |
110 |
Q |
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| T |
47316192 |
cacagaaaggagatccgatttgttggaagaactctagtagcggcttcatatactgtttaatattatcgttaaatttacaagaggagggagggtaggaagt |
47316093 |
T |
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| Q |
111 |
ttgaaaaacggcaaacgagtgtgcggtagaaatctgaattaacttatccaaatgaagtttcttggtagcattataaatatttttcgcagcatccaaaaga |
210 |
Q |
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| T |
47316092 |
ttgaaaaacggcaaacgagtgtgcggtagaaatctgaattaacttatccaaatgaagtttcttggtagcattataaatatttttcgcagcatccaaaaga |
47315993 |
T |
|
| Q |
211 |
actccccacaaagcattgttactcccacccaaaacttcgtttcccacagcaattccacgaatgcgtgtctcgggaagaaatgcttgcacattttgtttca |
310 |
Q |
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| T |
47315992 |
actccccacaaagcattgttactcccacccaaaacttcgtttcccacagcaattccacgaatgcgcgtctcgggaagaaatgcctgcacattttgtttca |
47315893 |
T |
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| Q |
311 |
cccaattcaaagcatgatctgcactcgaactcatgtcctgcagttgtccattggtaactccaatcacaatatcaagaccagtcccactaaaagctttgag |
410 |
Q |
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| T |
47315892 |
cccaattcaaagcatgatctgcactcgaactcatgtcctgcagttgtccattggtaactccaatcacaatatcaagaccagtcccactaaaagctttgag |
47315793 |
T |
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| Q |
411 |
aacactgtgatcagcatcgtatattctaatgttccttatttttgcagctctgagaagagtaacaacttcatcaggtgatgggatgttatccgcaattctc |
510 |
Q |
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| T |
47315792 |
aacactgtgatcagcatcgtatattctaatgttccttatttttgcagctctgagaagagtaacaacttcatcaggtgatgggatgttatccgcaattctc |
47315693 |
T |
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| Q |
511 |
ccataatttataccataggt |
530 |
Q |
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| T |
47315692 |
ccataatttataccataggt |
47315673 |
T |
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