View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_133 (Length: 275)
Name: NF1404_low_133
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_133 |
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Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 22887116 - 22887250
Alignment:
| Q |
129 |
tgttcttattgtctacgaaaatggtagaggtattctatacttagggctttggtcaatttactctcaaattgtttctaacaaactaatgtggtttaaa-tt |
227 |
Q |
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| T |
22887116 |
tgttcttattgtctacaagaatggtaaaggtattctttacctagggctttggtcaatttactctcaaattgtttcaaacaaactaatttggctgaaattt |
22887215 |
T |
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| Q |
228 |
tcttaatttcagggatcactttagaggtatgagta |
262 |
Q |
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| T |
22887216 |
ttttaatttcagggatcattttagaagtatgagta |
22887250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 22807021 - 22807133
Alignment:
| Q |
150 |
tggtagaggtattctatacttagggctttggtcaatttactctcaaattgtttctaacaaactaatgtggtttaaatttcttaatttcagggatcacttt |
249 |
Q |
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| T |
22807021 |
tggtaaaggtattctttacctagggctttggtcagtttactctcaaattgtttcaaacaaactaatgtgg-ttgaattatttaatttcagggatcattta |
22807119 |
T |
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| Q |
250 |
agaggtatgagtat |
263 |
Q |
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| T |
22807120 |
agaagtatgagtat |
22807133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 22838190 - 22838287
Alignment:
| Q |
28 |
caaaccagactcaaatcctcaacaacctttccttgccataaccagggcatcaagaactttacgtattcaatgcctctaatgcaatttggattataatg |
125 |
Q |
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| T |
22838190 |
caaaccatactcaaatcatcaacaacctttccttgccataaccagggcttcaagaattttacgtattcaaagcttcaaaggcaatttggattctaatg |
22838287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 22806926 - 22807010
Alignment:
| Q |
30 |
aaccagactcaaatcctcaacaacctttccttgccataaccagggcatcaagaactttacgtattcaatgcctctaatgcaattt |
114 |
Q |
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| T |
22806926 |
aaccagagtcaaatcctcaacaacctttccttgccataagcagggcttcaagaactttacatcttcaatgccgcaaatgcaattt |
22807010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 21152692 - 21152614
Alignment:
| Q |
185 |
tttactctcaaattgtttctaacaaactaatgtggtttaaatttcttaatttcagggatcactttagaggtatgagtat |
263 |
Q |
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| T |
21152692 |
tttattctcaaattgtttcaaacaaactaatgtggttgaaattttttaatttcagggatcattttagaagtatgagtat |
21152614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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