View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_137 (Length: 269)

Name: NF1404_low_137
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_137
NF1404_low_137
[»] chr2 (11 HSPs)
chr2 (77-257)||(11666241-11666421)
chr2 (30-65)||(45168842-45168877)
chr2 (31-69)||(2979693-2979731)
chr2 (30-68)||(37918064-37918102)
chr2 (30-66)||(29198984-29199020)
chr2 (30-66)||(30728311-30728347)
chr2 (30-66)||(32037047-32037083)
chr2 (30-66)||(37861296-37861332)
chr2 (30-62)||(38975244-38975276)
chr2 (33-64)||(45166936-45166967)
chr2 (30-66)||(20283358-20283394)
[»] chr4 (19 HSPs)
chr4 (30-72)||(40630871-40630913)
chr4 (34-71)||(18665654-18665691)
chr4 (30-71)||(44234796-44234837)
chr4 (30-66)||(7315481-7315517)
chr4 (30-69)||(7882599-7882638)
chr4 (30-68)||(36968404-36968442)
chr4 (34-67)||(12689726-12689759)
chr4 (30-63)||(29350942-29350975)
chr4 (30-66)||(18103686-18103722)
chr4 (31-71)||(22453219-22453259)
chr4 (30-70)||(22460147-22460187)
chr4 (28-62)||(5835907-5835941)
chr4 (30-68)||(6807831-6807869)
chr4 (30-68)||(9390199-9390237)
chr4 (30-68)||(19509630-19509668)
chr4 (33-62)||(21357945-21357974)
chr4 (30-63)||(30301655-30301688)
chr4 (30-66)||(41548347-41548382)
chr4 (34-66)||(45286458-45286490)
[»] chr8 (10 HSPs)
chr8 (30-71)||(43204229-43204270)
chr8 (34-70)||(26849163-26849199)
chr8 (30-70)||(32776988-32777028)
chr8 (30-66)||(37807072-37807108)
chr8 (30-69)||(30592180-30592219)
chr8 (30-65)||(34322703-34322738)
chr8 (36-71)||(42576137-42576172)
chr8 (30-68)||(39154182-39154220)
chr8 (34-62)||(21257772-21257800)
chr8 (36-68)||(39679450-39679482)
[»] chr3 (12 HSPs)
chr3 (30-69)||(41283816-41283855)
chr3 (30-69)||(52787840-52787879)
chr3 (30-69)||(52794059-52794098)
chr3 (30-69)||(39233206-39233245)
chr3 (30-68)||(5331636-5331674)
chr3 (30-69)||(4606775-4606814)
chr3 (31-62)||(7047756-7047787)
chr3 (35-66)||(18096075-18096106)
chr3 (30-68)||(13282444-13282482)
chr3 (34-66)||(8406031-8406063)
chr3 (30-66)||(31167714-31167750)
chr3 (31-63)||(41720210-41720242)
[»] chr1 (13 HSPs)
chr1 (30-69)||(9196048-9196087)
chr1 (30-70)||(48187563-48187603)
chr1 (30-69)||(7880152-7880191)
chr1 (30-68)||(14752520-14752558)
chr1 (30-68)||(44773524-44773562)
chr1 (30-62)||(23832971-23833003)
chr1 (34-66)||(33334601-33334633)
chr1 (31-66)||(28729044-28729079)
chr1 (30-66)||(17171507-17171543)
chr1 (30-66)||(20360553-20360589)
chr1 (30-66)||(20550381-20550417)
chr1 (30-66)||(27276078-27276114)
chr1 (34-66)||(45310885-45310917)
[»] chr6 (10 HSPs)
chr6 (30-66)||(26631420-26631456)
chr6 (30-66)||(26737395-26737431)
chr6 (30-65)||(14629027-14629062)
chr6 (30-65)||(28329892-28329927)
chr6 (30-65)||(28507528-28507563)
chr6 (30-63)||(30800410-30800443)
chr6 (31-69)||(16802180-16802218)
chr6 (30-68)||(23306456-23306494)
chr6 (30-63)||(4582074-4582107)
chr6 (30-62)||(25359636-25359668)
[»] scaffold0063 (1 HSPs)
scaffold0063 (30-69)||(1786-1825)
[»] chr7 (12 HSPs)
chr7 (30-65)||(9195697-9195732)
chr7 (30-69)||(11564626-11564665)
chr7 (30-69)||(37567804-37567843)
chr7 (32-69)||(27088042-27088079)
chr7 (32-69)||(27190222-27190259)
chr7 (30-70)||(32392437-32392477)
chr7 (30-70)||(38189635-38189675)
chr7 (30-73)||(34381583-34381626)
chr7 (30-68)||(26925027-26925065)
chr7 (34-68)||(33154508-33154542)
chr7 (34-66)||(20948315-20948347)
chr7 (34-66)||(40667325-40667357)
[»] chr5 (6 HSPs)
chr5 (30-64)||(42379239-42379273)
chr5 (30-66)||(24077559-24077595)
chr5 (34-66)||(8807105-8807137)
chr5 (34-66)||(10378150-10378182)
chr5 (30-66)||(23101846-23101882)
chr5 (34-66)||(37505273-37505305)
[»] scaffold0294 (1 HSPs)
scaffold0294 (34-70)||(13226-13262)
[»] scaffold0087 (1 HSPs)
scaffold0087 (30-70)||(8521-8561)
[»] scaffold0084 (1 HSPs)
scaffold0084 (35-67)||(4035-4067)
[»] scaffold0136 (1 HSPs)
scaffold0136 (30-68)||(10923-10961)
[»] scaffold0048 (1 HSPs)
scaffold0048 (31-64)||(47085-47118)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 11666421 - 11666241
Alignment:
Q  77 ttattgataagtcttcatggtgtttagtaccaaagaatgaacaaaccgtgtgatttatatcattcaataaggaagacgaaatgaagagtgatgaagacaa 176  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||| || ||||| |||||||||||||||||||||| ||||||| ||||||||| ||    
T  11666421 ttattgataagtcttcatggtgggtagtaccaaagaatgaaaaaaccatgcgatttttatcattcaataaggaagacgacatgaagaatgatgaagataa 11666322  T
Q  177 nnnnnnnnaaggttaacatggagattttaaaatttatcgaaagaccaaattgtctcaaaatattactgttatagggaccta 257  Q
            |||||||| |||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||||||||||    
T  11666321 atttttttaaggttaatatggagattttaaaatttagtgaaggaccaaattgtctcaaaatattagtgttatagggaccta 11666241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 45168842 - 45168877
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcc 65  Q
    ||||||||||||||||||||||||||||||||||||    
T  45168842 cccctcccctccaaaacccaactcgcaaacaaagcc 45168877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 2979731 - 2979693
Alignment:
Q  31 ccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  2979731 ccctcccttccaaaacccaactcgcaaacaaagcctaag 2979693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 37918064 - 37918102
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  37918064 cccctcccctccaaaatccaactcgcaaacaaagcctaa 37918102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 29198984 - 29199020
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||| ||||||||||||||||||||    
T  29198984 cccctcccctccaaaatccaactcgcaaacaaagcct 29199020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 30728311 - 30728347
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||| ||||||||||||||||||||    
T  30728311 cccctcccctccaaaatccaactcgcaaacaaagcct 30728347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 32037083 - 32037047
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||||||||||| ||||||||||||    
T  32037083 cccctcccctccaaaacccaactcccaaacaaagcct 32037047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 37861332 - 37861296
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    ||||||||||||||| |||||||||||||||||||||    
T  37861332 cccctcccctccaaatcccaactcgcaaacaaagcct 37861296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 38975276 - 38975244
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaa 62  Q
    |||||||||||||||||||||||||||||||||    
T  38975276 cccctcccctccaaaacccaactcgcaaacaaa 38975244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 45166967 - 45166936
Alignment:
Q  33 ctcccctccaaaacccaactcgcaaacaaagc 64  Q
    ||||||||||||||||||||||||||||||||    
T  45166967 ctcccctccaaaacccaactcgcaaacaaagc 45166936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 20283394 - 20283358
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  20283394 cccctccccttcaaaacccaactcacaaacaaagcct 20283358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 40630913 - 40630871
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaaggat 72  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40630913 cccctcccctccaaaacccaactcgcaaacaaagcctaaggat 40630871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 18665654 - 18665691
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcctaagga 71  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18665654 tcccctccaaaacccaactcgcaaacaaagcctaagga 18665691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 44234796 - 44234837
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaagga 71  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  44234796 cccctcccctccaaaacccaactcgcaaacaaaacctaagga 44234837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 7315481 - 7315517
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  7315481 cccctcccctccaaaacccaactcgcaaacaaagcct 7315517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 7882599 - 7882638
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  7882599 cccctcccctccaaaatccaactcgcaaacaaagcctaag 7882638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 36968442 - 36968404
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36968442 cccctcccctccaaaacccaactcccaaacaaagcctaa 36968404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 12689726 - 12689759
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagccta 67  Q
    ||||||||||||||||||||||||||||||||||    
T  12689726 tcccctccaaaacccaactcgcaaacaaagccta 12689759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 29350975 - 29350942
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaag 63  Q
    ||||||||||||||||||||||||||||||||||    
T  29350975 cccctcccctccaaaacccaactcgcaaacaaag 29350942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 18103722 - 18103686
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    ||||||||||||||| |||||||||||||||||||||    
T  18103722 cccctcccctccaaatcccaactcgcaaacaaagcct 18103686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 22453219 - 22453259
Alignment:
Q  31 ccctcccctccaaaacccaactcgcaaacaaagcctaagga 71  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  22453219 cccttccctccaaaacccaactcacaaacaaagcctaagga 22453259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 22460147 - 22460187
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaagg 70  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  22460147 cccctcccctccaaaatccaactctcaaacaaagcctaagg 22460187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 5835941 - 5835907
Alignment:
Q  28 cacccctcccctccaaaacccaactcgcaaacaaa 62  Q
    |||||||||||||||||||||||||||||| ||||    
T  5835941 cacccctcccctccaaaacccaactcgcaagcaaa 5835907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 6807869 - 6807831
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  6807869 cccctcccctccaaaattcaactcgcaaacaaagcctaa 6807831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 9390237 - 9390199
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  9390237 cccctcccctccaaaacccaactcacaaataaagcctaa 9390199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 19509668 - 19509630
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  19509668 cccctccccaccaaaatccaactcgcaaacaaagcctaa 19509630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 21357945 - 21357974
Alignment:
Q  33 ctcccctccaaaacccaactcgcaaacaaa 62  Q
    ||||||||||||||||||||||||||||||    
T  21357945 ctcccctccaaaacccaactcgcaaacaaa 21357974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 30301655 - 30301688
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaag 63  Q
    |||||||||||||||||||||||| |||||||||    
T  30301655 cccctcccctccaaaacccaactcccaaacaaag 30301688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 41548382 - 41548347
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    ||||||||||||||| |||||||||||||||||||||    
T  41548382 cccctcccctccaaa-cccaactcgcaaacaaagcct 41548347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 45286490 - 45286458
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||| ||||||||||||||||||||    
T  45286490 tcccctccaaaatccaactcgcaaacaaagcct 45286458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 43204270 - 43204229
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaagga 71  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43204270 cccctcccctccaaaacccaactcgcaaacaaagcctaagga 43204229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 26849199 - 26849163
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcctaagg 70  Q
    |||||||||||||||||||||||||||||||||||||    
T  26849199 tcccctccaaaacccaactcgcaaacaaagcctaagg 26849163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 32776988 - 32777028
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaagg 70  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  32776988 cccctcccctccaaaacccaactcgcaaacaaagcttaagg 32777028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 37807072 - 37807108
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  37807072 cccctcccctccaaaacccaactcgcaaacaaagcct 37807108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 30592180 - 30592219
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  30592180 cccctcccctccaaaaaccaactcgcaaacaaagcctaag 30592219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 34322738 - 34322703
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcc 65  Q
    ||||||||||||||||||||||||||||||||||||    
T  34322738 cccctcccctccaaaacccaactcgcaaacaaagcc 34322703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 42576172 - 42576137
Alignment:
Q  36 ccctccaaaacccaactcgcaaacaaagcctaagga 71  Q
    ||||||||||||||||||||||||||||||| ||||    
T  42576172 ccctccaaaacccaactcgcaaacaaagccttagga 42576137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 39154220 - 39154182
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  39154220 cccctcctctccaaaacccaactcccaaacaaagcctaa 39154182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 21257800 - 21257772
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaa 62  Q
    |||||||||||||||||||||||||||||    
T  21257800 tcccctccaaaacccaactcgcaaacaaa 21257772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 39679482 - 39679450
Alignment:
Q  36 ccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    |||| ||||||||||||||||||||||||||||    
T  39679482 cccttcaaaacccaactcgcaaacaaagcctaa 39679450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 41283855 - 41283816
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41283855 cccctcccctccaaaacccaactcgcaaacaaagcctaag 41283816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 52787840 - 52787879
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52787840 cccctcccctccaaaacccaactcgcaaacaaagcctaag 52787879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 52794059 - 52794098
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52794059 cccctcccctccaaaacccaactcgcaaacaaagcctaag 52794098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 39233206 - 39233245
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  39233206 cccctcccctccaaaatccaactcgcaaacaaagcctaag 39233245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 5331674 - 5331636
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  5331674 cccctcccctccaaaacctaactcgcaaacaaagcctaa 5331636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 4606775 - 4606814
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  4606775 cccctcccctccaaaattcaactcgcaaacaaagcctaag 4606814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 62
Target Start/End: Complemental strand, 7047787 - 7047756
Alignment:
Q  31 ccctcccctccaaaacccaactcgcaaacaaa 62  Q
    ||||||||||||||||||||||||||||||||    
T  7047787 ccctcccctccaaaacccaactcgcaaacaaa 7047756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 18096106 - 18096075
Alignment:
Q  35 cccctccaaaacccaactcgcaaacaaagcct 66  Q
    ||||||||||||||||||||||||||||||||    
T  18096106 cccctccaaaacccaactcgcaaacaaagcct 18096075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 13282444 - 13282482
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  13282444 cccctcccctctaaaatccaactcgcaaacaaagcctaa 13282482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 8406063 - 8406031
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||||||| ||||||||||||    
T  8406063 tcccctccaaaacccaactcccaaacaaagcct 8406031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 31167714 - 31167750
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||| |||||| |||||||||||||    
T  31167714 cccctcccctccaaaatccaacttgcaaacaaagcct 31167750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 41720210 - 41720242
Alignment:
Q  31 ccctcccctccaaaacccaactcgcaaacaaag 63  Q
    |||||||||||||||||||||||| ||||||||    
T  41720210 ccctcccctccaaaacccaactcgaaaacaaag 41720242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 9196087 - 9196048
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9196087 cccctcccctccaaaacccaactcgcaaacaaagcctaag 9196048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 48187603 - 48187563
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaagg 70  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  48187603 cccctcccctccaaaacacaactcgcaaacaaagcctaagg 48187563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 7880152 - 7880191
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  7880152 cccctcccctccaaaatccaactcgcaaacaaagcctaag 7880191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 14752558 - 14752520
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  14752558 cccctcccctccaaaacccaactcgcaaacaaaacctaa 14752520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 44773562 - 44773524
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  44773562 cccctcccttccaaaacccaactcgcaaacaaagcctaa 44773524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 23832971 - 23833003
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaa 62  Q
    |||||||||||||||||||||||||||||||||    
T  23832971 cccctcccctccaaaacccaactcgcaaacaaa 23833003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 33334633 - 33334601
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||||||||||||||||||||    
T  33334633 tcccctccaaaacccaactcgcaaacaaagcct 33334601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 28729044 - 28729079
Alignment:
Q  31 ccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28729044 ccctcccctccaaaacctaactcgcaaacaaagcct 28729079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 17171507 - 17171543
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  17171507 ccccttccctccaaaactcaactcgcaaacaaagcct 17171543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 20360589 - 20360553
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  20360589 cccctcccctacaaaatccaactcgcaaacaaagcct 20360553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 20550381 - 20550417
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  20550381 cccctcccctacaaaatccaactcgcaaacaaagcct 20550417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 27276078 - 27276114
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  27276078 cccctcccctccaaaatccaactcacaaacaaagcct 27276114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 45310917 - 45310885
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||| ||||||||||||||||||||    
T  45310917 tcccctccaaaatccaactcgcaaacaaagcct 45310885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 26631420 - 26631456
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  26631420 cccctcccctccaaaacccaactcgcaaacaaagcct 26631456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 26737395 - 26737431
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  26737395 cccctcccctccaaaacccaactcgcaaacaaagcct 26737431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 14629027 - 14629062
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcc 65  Q
    ||||||||||||||||||||||||||||||||||||    
T  14629027 cccctcccctccaaaacccaactcgcaaacaaagcc 14629062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 28329927 - 28329892
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcc 65  Q
    ||||||||||||||||||||||||||||||||||||    
T  28329927 cccctcccctccaaaacccaactcgcaaacaaagcc 28329892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 28507563 - 28507528
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcc 65  Q
    ||||||||||||||||||||||||||||||||||||    
T  28507563 cccctcccctccaaaacccaactcgcaaacaaagcc 28507528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 30800443 - 30800410
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaag 63  Q
    ||||||||||||||||||||||||||||||||||    
T  30800443 cccctcccctccaaaacccaactcgcaaacaaag 30800410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 16802218 - 16802180
Alignment:
Q  31 ccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  16802218 ccctcccctccaaaatccaactcgcaaacaaaccctaag 16802180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 23306456 - 23306494
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  23306456 cccctcccctccaaaattcaactcgcaaacaaagcctaa 23306494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 4582107 - 4582074
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaag 63  Q
    |||||||||||||||| |||||||||||||||||    
T  4582107 cccctcccctccaaaatccaactcgcaaacaaag 4582074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 25359668 - 25359636
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaa 62  Q
    |||||||||||||||| ||||||||||||||||    
T  25359668 cccctcccctccaaaatccaactcgcaaacaaa 25359636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 1825 - 1786
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1825 cccctcccctccaaaacccaactcacaaacaaagcctaag 1786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 9195697 - 9195732
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcc 65  Q
    ||||||||||||||||||||||||||||||||||||    
T  9195697 cccctcccctccaaaacccaactcgcaaacaaagcc 9195732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 11564626 - 11564665
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  11564626 cccctcccttccaaaacccaactcgcaaacaaagcctaag 11564665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 37567843 - 37567804
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  37567843 cccctcccctccaaaacccaactcccaaacaaagcctaag 37567804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 27088042 - 27088079
Alignment:
Q  32 cctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    |||||||||||||||||||||||||||||||| |||||    
T  27088042 cctcccctccaaaacccaactcgcaaacaaagtctaag 27088079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 27190259 - 27190222
Alignment:
Q  32 cctcccctccaaaacccaactcgcaaacaaagcctaag 69  Q
    |||||||||||||||||||||||||||||||| |||||    
T  27190259 cctcccctccaaaacccaactcgcaaacaaagtctaag 27190222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 32392437 - 32392477
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaagg 70  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  32392437 cccctcccctccaaaatccaactcgcaaacaaggcctaagg 32392477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 38189675 - 38189635
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaagg 70  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  38189675 cccctcccctccaaaatccaacacgcaaacaaagcctaagg 38189635  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 34381583 - 34381626
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaaggata 73  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||    
T  34381583 cccctctcctccaaaatccaactcgcaaacaaaacctaaggata 34381626  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 26925027 - 26925065
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  26925027 cccctcccctccaaaatccaacttgcaaacaaagcctaa 26925065  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 33154508 - 33154542
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    ||||||||||||| |||||||||||||||||||||    
T  33154508 tcccctccaaaactcaactcgcaaacaaagcctaa 33154542  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 20948347 - 20948315
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcct 66  Q
    ||||||||||||| |||||||||||||||||||    
T  20948347 tcccctccaaaactcaactcgcaaacaaagcct 20948315  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 40667325 - 40667357
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||| ||||||||||||||||||||    
T  40667325 tcccctccaaaatccaactcgcaaacaaagcct 40667357  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 42379273 - 42379239
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagc 64  Q
    |||||||||||||||||||||||||||||||||||    
T  42379273 cccctcccctccaaaacccaactcgcaaacaaagc 42379239  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 24077559 - 24077595
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24077559 cccctcccctccaaaatccaactcgcaaacaaagcct 24077595  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 8807137 - 8807105
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||| ||||||||||||||||||||    
T  8807137 tcccctccaaaatccaactcgcaaacaaagcct 8807105  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 10378150 - 10378182
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||| ||||||||||||||||||||    
T  10378150 tcccctccaaaatccaactcgcaaacaaagcct 10378182  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 23101846 - 23101882
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcct 66  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  23101846 cccctcccctctaaaatccaactcgcaaacaaagcct 23101882  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 37505273 - 37505305
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcct 66  Q
    |||||||||||||||||||| ||||||||||||    
T  37505273 tcccctccaaaacccaactcccaaacaaagcct 37505305  T

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Target: scaffold0294 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 13262 - 13226
Alignment:
Q  34 tcccctccaaaacccaactcgcaaacaaagcctaagg 70  Q
    |||||||||||| ||||||||||||||||||||||||    
T  13262 tcccctccaaaatccaactcgcaaacaaagcctaagg 13226  T

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Target: scaffold0087 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 8561 - 8521
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaagg 70  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  8561 cccctcccctccaaaacccgactcacaaacaaagcctaagg 8521  T

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Target: scaffold0084 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 4067 - 4035
Alignment:
Q  35 cccctccaaaacccaactcgcaaacaaagccta 67  Q
    |||||||||||||||||||||||||||||||||    
T  4067 cccctccaaaacccaactcgcaaacaaagccta 4035  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 10961 - 10923
Alignment:
Q  30 cccctcccctccaaaacccaactcgcaaacaaagcctaa 68  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  10961 cccctaccctccaaaatccaactcgcaaacaaagcctaa 10923  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 47085 - 47118
Alignment:
Q  31 ccctcccctccaaaacccaactcgcaaacaaagc 64  Q
    |||||||||| |||||||||||||||||||||||    
T  47085 ccctcccctcaaaaacccaactcgcaaacaaagc 47118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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