View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_144 (Length: 252)
Name: NF1404_low_144
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_144 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 31234261 - 31234506
Alignment:
| Q |
1 |
ataaaccataaaaaagctactcataatgtttattaaatagaactagtatcgatcaatatttgttaacatcaacctctaattacaacgtcttattgatcac |
100 |
Q |
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| T |
31234261 |
ataaaccataaaaaagctactcataatgtttattaaatagaattagtatcgatcaatatttgttaagatcaacctctaattacaacgtcttattgatcac |
31234360 |
T |
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| Q |
101 |
ttcaattctttgttaaacataagccacatagaaagcgaagtttgtgataagtaacatttaagctattagtatgtaaatgcagatatattgaagctattag |
200 |
Q |
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| T |
31234361 |
ttcaattctttgttaaacataagccacatagaaagcgaagtttgtgataagtaacatttaagctattagtatgtaaatgcagatatattgaagctattag |
31234460 |
T |
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| Q |
201 |
attgttattagattagagtatctacaaaatttattagtattatcta |
246 |
Q |
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| T |
31234461 |
attgttattagattagagtatctacaaaatttattagtataatcta |
31234506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 31243494 - 31243575
Alignment:
| Q |
165 |
attagtatgtaaatgcagatatattgaagctattagattgttattagattagagtatctacaaaatttattagtattatcta |
246 |
Q |
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|||||||| |||||| |||||||| | ||||| ||||| ||||| || |||||||||| |||||||||||||| ||||| |
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| T |
31243494 |
attagtatctaaatgaagatatatagtagctaatagatatttatttccttggagtatctactaaatttattagtataatcta |
31243575 |
T |
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