View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_149 (Length: 251)
Name: NF1404_low_149
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_149 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7543417 - 7543169
Alignment:
| Q |
1 |
ctatatacttggccgttgatgcttcctaccatacaatcaaccatcattttagtcataatcaaaataannnnnnnn---------gactagtggtggcaaa |
91 |
Q |
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| T |
7543417 |
ctatatacttggccgttgatgcttcctaccatacaatcaaccatcattttagtcataatcaaaataaatcaaaataatttttttgactattggtggcaaa |
7543318 |
T |
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| Q |
92 |
gagcatttactataaattattagatcaatatacatcaatgaatagacaaaaactggaggttatgaaaactatataagtgtgtnnnnnnnnnnnnnnntat |
191 |
Q |
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| T |
7543317 |
gagcatttactataaattattagatcaatatacatcaatgaatagacaaaaactggaggttatgaaaactatataagtgagtaaaaaaactaaaaaatat |
7543218 |
T |
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| Q |
192 |
acaaatgtctatttctctacaaatctgatcaacaaaattaacaattcat |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7543217 |
acaaatgtctatttctctacaaatctgatcaacaaaattaacaattcat |
7543169 |
T |
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