View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1404_low_150 (Length: 251)
Name: NF1404_low_150
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_150 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 142504 - 142283
Alignment:
| Q |
30 |
caaaatgcatgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtaaaaaggacctattgagataaactgtggtgtataagcat |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
142504 |
caaaatgcatgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtgaaaaggacctattgagataaactttggtgtataagcat |
142405 |
T |
|
| Q |
130 |
cttcattcaacttcagaacatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatttctggaatgttgattatgtgctgaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
142404 |
cttcattcaacttcagaacatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatttctggaatgttgattatgtgctgaat |
142305 |
T |
|
| Q |
230 |
ttgtggtatagtttcagaactc |
251 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
142304 |
ttgtggtatagtttcagaactc |
142283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 45961168 - 45961367
Alignment:
| Q |
30 |
caaaatgcatgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtaaaaaggacctattgagataaactgtggtgtataagcat |
129 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45961168 |
caaaatgcatgaaagtagctttgtttttgtttctcttgatttacttctggattatgactgtgaaaaggacctattgagataaactttggtgtataagcat |
45961267 |
T |
|
| Q |
130 |
cttcattcaacttcagaacatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatttctggaatgttgattatgtgctgaat |
229 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
45961268 |
cttcattcaacttcagaagatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgctttctggaatgatgattatgtgctgaat |
45961367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 292669 - 292471
Alignment:
| Q |
38 |
atgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtaaaaaggacctattgagataaactgtggtgtataagcatcttcattc |
137 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||| || || ||||||| || |||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
292669 |
atgaaagtacttttgtttctgtttctcttgatttagttcagggttatgactgtgaagaggacctattgagataaactttggtgtgtaagcatcttcattc |
292570 |
T |
|
| Q |
138 |
aacttcagaacatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatttctggaatgttgattatgtgctgaatttgtggt |
236 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
292569 |
aacttcagaagatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatctctggaatgttgattatgtgctgaatctgtggt |
292471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University