View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_156 (Length: 235)
Name: NF1404_low_156
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_156 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 36150662 - 36150896
Alignment:
| Q |
1 |
tttctcccctcttcctccacaacaccaccaagcaacaacacacatttgaattcctaaaatttctaacaacacttagtaaaagccaaaaatgaggaatatg |
100 |
Q |
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| T |
36150662 |
tttctcccctcttcctccacaacaccaccaagcaacaacacacatttgaattcctacaatttccaacaacacttagtaaaaaccaaaaatgaggaatatg |
36150761 |
T |
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| Q |
101 |
atgcaacaatctctcattaccacatcatcccttctttttgcgattactttttacaccgcccccactttggcccagctctcaccaattcaatccccaacaa |
200 |
Q |
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| T |
36150762 |
atgcagcagtctctcatttccacctcattccttctttttgcaattactttttacacctccaccactttagcccaactctcaccaattcaatccccaacaa |
36150861 |
T |
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| Q |
201 |
catcatctccatcaccacccttaccatcaacaaca |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36150862 |
catcatctccatcaccacccttaccatcaacaaca |
36150896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 235
Target Start/End: Original strand, 36154142 - 36154282
Alignment:
| Q |
95 |
aatatgatgcaacaatctctcattaccacatcatcccttctttttgcgattactttttacaccgcccccactttggcccagctctcaccaattcaatccc |
194 |
Q |
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|||||||||||||||||||||||| |||| |||| | ||||| | || ||| |||| ||||| | ||||||| ||||| ||||||||||||||| ||| |
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| T |
36154142 |
aatatgatgcaacaatctctcatttccacctcattctttcttctagcaattgctttctacactcctaccactttagcccaactctcaccaattcaaaccc |
36154241 |
T |
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| Q |
195 |
caacaacatcatctccatcaccacccttaccatcaacaaca |
235 |
Q |
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| T |
36154242 |
catcaacatcatcaccctcaccacccttaccatcaacaaca |
36154282 |
T |
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