View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_160 (Length: 228)
Name: NF1404_low_160
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_160 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 47122025 - 47121907
Alignment:
| Q |
1 |
gccaagattagcaatctgtaaggaaaatgtggagaaaaattaggacatttgatactaaatataaatattttgtcagactcaaaatattgaagcactattt |
100 |
Q |
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| T |
47122025 |
gccaagattagcaatctgtaaggaaaatgtggagaaaaattaggacatttgatactaaatataaatattttgtcagactcaaaatattgaagcactattt |
47121926 |
T |
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| Q |
101 |
ctataccaatatatttaat |
119 |
Q |
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| T |
47121925 |
ctataccaatatatttaat |
47121907 |
T |
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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 21383694 - 21383613
Alignment:
| Q |
120 |
gagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaagtctact--tacaatttgctctatt |
199 |
Q |
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| T |
21383694 |
gagcggtgctatatagcacgatcctctttccccatgaaattgcacgactgccataaaatctactcgtacaatttgctctatt |
21383613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 24908286 - 24908209
Alignment:
| Q |
120 |
gagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaagtctacttacaatttgctcta |
197 |
Q |
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| T |
24908286 |
gagcggtgctatatagcacgacgctctttccccacgaatctgcacgactagcataaaatctacacacaatttgctcta |
24908209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 24908208 - 24908129
Alignment:
| Q |
120 |
gagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaagtctacttacaatttgctctatt |
199 |
Q |
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| T |
24908208 |
gagcggtgctatatagcacggcgctctttccccacgaatctgcacgactagcataaaatctacacacaatttgctctatt |
24908129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 37502071 - 37501991
Alignment:
| Q |
119 |
tgagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaagtctacttacaatttgctctatt |
199 |
Q |
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| T |
37502071 |
tgagcggtgctatatagcacgacgctctttccccacgaatctgcacgactagcaaaaaatctacacacaattttctctatt |
37501991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 3444053 - 3443974
Alignment:
| Q |
120 |
gagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaagtctacttacaatttgctctatt |
199 |
Q |
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| T |
3444053 |
gagcggtgctatatagcacgacgctctttccccacgaatctgcacgactagcataaaatctatacataatttgctctatt |
3443974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 39660157 - 39660213
Alignment:
| Q |
120 |
gagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaa |
176 |
Q |
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|||| |||||||||||||| |||| |||||| || ||| ||||||||| |||||||| |
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| T |
39660157 |
gagcagtgctatatagcacgatgccctttccccacgaatttgcacgacatgcataaa |
39660213 |
T |
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