View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_177 (Length: 206)
Name: NF1404_low_177
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_177 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 52 - 172
Target Start/End: Original strand, 2672310 - 2672430
Alignment:
| Q |
52 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
151 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2672310 |
atcataaccatcttttaagcttgatataaaatcatgagcatttgaagcctttgatgcctctataatctcactctcatcaaccgtatcatcataagctcca |
2672409 |
T |
|
| Q |
152 |
tatgcaatattttcccctatg |
172 |
Q |
| |
|
|||||||||||||||| |||| |
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|
| T |
2672410 |
tatgcaatattttcccttatg |
2672430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 52 - 172
Target Start/End: Original strand, 2568935 - 2569055
Alignment:
| Q |
52 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
151 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
2568935 |
atcataaccatcttttaagcttgatataaaatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctcca |
2569034 |
T |
|
| Q |
152 |
tatgcaatattttcccctatg |
172 |
Q |
| |
|
|||||||||||||||| |||| |
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|
| T |
2569035 |
tatgcaatattttcccttatg |
2569055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 2440389 - 2440276
Alignment:
| Q |
52 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
151 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
2440389 |
atcataaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatatgctcca |
2440290 |
T |
|
| Q |
152 |
tatgcaatattttc |
165 |
Q |
| |
|
||| |||||||||| |
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|
| T |
2440289 |
tatacaatattttc |
2440276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 2592335 - 2592222
Alignment:
| Q |
52 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
151 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||| |
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|
| T |
2592335 |
atcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctataatttcactttcatcaaccttatcatcatatgatcca |
2592236 |
T |
|
| Q |
152 |
tatgcaatattttc |
165 |
Q |
| |
|
|||||||||||||| |
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|
| T |
2592235 |
tatgcaatattttc |
2592222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 2596494 - 2596607
Alignment:
| Q |
52 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
151 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
2596494 |
atcataaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatatgctcca |
2596593 |
T |
|
| Q |
152 |
tatgcaatattttc |
165 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
2596594 |
tatacaatattttc |
2596607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 2623878 - 2623766
Alignment:
| Q |
53 |
tcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctccat |
152 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| | ||||| |
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|
| T |
2623878 |
tcatatccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctataatttcactctcatcaacctgatcaccatatgatccat |
2623779 |
T |
|
| Q |
153 |
atgcaatattttc |
165 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2623778 |
atgcaatattttc |
2623766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 52 - 172
Target Start/End: Original strand, 2641150 - 2641270
Alignment:
| Q |
52 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
151 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
2641150 |
atcataaccatcttgtaagcttgatatgaaatcatgagcatttgcagcctttgatgcctgaataatctcactctcatcaactttatcatcataggctccg |
2641249 |
T |
|
| Q |
152 |
tatgcaatattttcccctatg |
172 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
2641250 |
tatgcaatattttcccttatg |
2641270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 2451110 - 2450994
Alignment:
| Q |
53 |
tcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctccat |
152 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
2451110 |
tcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaacctta---tcatatgctccat |
2451014 |
T |
|
| Q |
153 |
atgcaatattttcccctatg |
172 |
Q |
| |
|
|||||||||| |||| |||| |
|
|
| T |
2451013 |
atgcaatattctcccttatg |
2450994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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