View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_18 (Length: 506)
Name: NF1404_low_18
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 28 - 498
Target Start/End: Complemental strand, 8768308 - 8767838
Alignment:
| Q |
28 |
caatatccagcaagtgtaacaacgttcggatgccgcaagcgtgacatattagaaatggcttcaagaaaattgtcttcctcttgtaaagacagtgctgcgt |
127 |
Q |
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| T |
8768308 |
caatatccagcaagtgtaacaacgttcggatgccgcaagcgtgacatattagaaatggcttcaagaaaattgtcttcctcttgtaaagacagtgctgcgt |
8768209 |
T |
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| Q |
128 |
tgtcaatcttcttgacggccataatctaaacaaaaggagaaacttgaaattaatagaatatttgagtatttataaattctcaaacaaacagtatgaaggt |
227 |
Q |
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| T |
8768208 |
tgtcaatcttcttgacggccataatctaaacaaaaggaaaaacttgaaattaatagaatatttgagtatttataaattctcaaacaaacagtatgaaggt |
8768109 |
T |
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| Q |
228 |
ggataacaaatgcaacattaaaagtttaccttcccgtttgggaattcagccttgtaaactcgaccaagagaaccttcaccaataataaattcttgactga |
327 |
Q |
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| T |
8768108 |
ggataacaaatgcaacattaaaagtttaccttcccatttgggaattcagccttgtaaactcgaccaagagaaccttcaccaataataaattcttgactga |
8768009 |
T |
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| Q |
328 |
agctatttgttgcactctggagtgaagcaactgtgtacgatgtggaagtgatgggagacctcatctgctttacagatccacttttcataggcatcctatc |
427 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8768008 |
agctatttgttgcactctggagcgaagcaactgtgtacgatgtggaagtgatgggagacctcatctgctttacagatccacttttcataggcatcctatc |
8767909 |
T |
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| Q |
428 |
catcgtcacattttctgcaggaggacgaggtttgagatctgtaataactgcagcacttttcaccctatgct |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8767908 |
catcgtcacattttctgcaggaggacgaggtttgagatctgtaataactgcagcacttttcaccctttgct |
8767838 |
T |
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