View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_19 (Length: 495)
Name: NF1404_low_19
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 30 - 440
Target Start/End: Complemental strand, 33875573 - 33875165
Alignment:
| Q |
30 |
gaggctacattgatctttcattgtatctctctcaaacaagagaaaattatcatcatggatttctcaagtaacaacaaatgcttaatgcttgttctgtgtt |
129 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33875573 |
gaggctacattgatctttcattgtatctctc--aaacaagagaaaattatcatcatggatttctcaagtaacaacaaatgcttaatgcttgttctgtgtt |
33875476 |
T |
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| Q |
130 |
tatttgtttttgtatcatcatgtgtgatgtgtattaatgttgatactcaaacatgtaccaaccgtaagagccgttgttttctcaagaaactgagttgccc |
229 |
Q |
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| T |
33875475 |
tatttgtttttgtatcatcatgtgtgatgtgtattaatgttgatactcaaacatgtaccaaccgtaagagccgttgttttctcaagaaactaccttgccc |
33875376 |
T |
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| Q |
230 |
aactcagtgcccttcaagatcaccagctaacccaaaagacaaagtttgctatcttgattgtgattctcctgtgtgcaaaactcagtgcaaaagtaagatt |
329 |
Q |
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| T |
33875375 |
tgctcagtgcccttcaagatcaccagctaacccaaaagacaaagtttgctatcttgattgtgattctcctgtgtgcaaaactcagtgcaaaagtaagatt |
33875276 |
T |
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| Q |
330 |
atttatgttcaatacttgacacatttgcttatatattannnnnnnagcattcgttttttatgataatggtcgcagtaagggttgcagtcactatgtgatc |
429 |
Q |
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| T |
33875275 |
atttatgttcaatacttgacacatttgcttatatattatttttttagcatttgttttttatgataatggtcgcagtaagggttgcagtcactatgtgatc |
33875176 |
T |
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| Q |
430 |
cttgatattgt |
440 |
Q |
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| T |
33875175 |
cttgatattgt |
33875165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 367
Target Start/End: Complemental strand, 33879844 - 33879512
Alignment:
| Q |
30 |
gaggctacattgatctttcattgtatctctctcaaacaagagaaaattatcatcatggatttctcaagtaacaacaaatgcttaatgcttgttctgtgtt |
129 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| ||| || |
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| T |
33879844 |
gaggctacattgatctttcattgtatctatc--aaacaagagaaaat---catcatggatttctcaagcaacaacaaatgcttaatgtttgttttgtttt |
33879750 |
T |
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| Q |
130 |
tatttgtttttgtatcatcatgtgtgatgtgtattaatgttgatactcaaacatgtaccaaccgtaagagccgttgttttctcaagaaactgagttgccc |
229 |
Q |
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| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33879749 |
tctttttatttgtatcatcatgtgtgatgtgtattaatgttgatactcaaacatgtaccaaccgtaagagccgttgttttctcaagaaactaccttgccc |
33879650 |
T |
|
| Q |
230 |
aactcagtgcccttcaagatcaccagctaacccaaaagacaaagtttgctatcttgattgtgattctcctgtgtgcaaaactcagtgcaaaagtaagatt |
329 |
Q |
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| T |
33879649 |
tgctcaatgtccttcaagatcaccagctaaccctagggaaaaagtttgttatcttgattgtgattctcctatgtgcaaaactcagtgcaaaagtaagatt |
33879550 |
T |
|
| Q |
330 |
atttatgttcaatacttgacacatttgcttatatatta |
367 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
33879549 |
atttatgttcaatacttgacacatttgcatatatatta |
33879512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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