View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_2 (Length: 718)
Name: NF1404_low_2
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 6 - 595
Target Start/End: Complemental strand, 51669291 - 51668692
Alignment:
| Q |
6 |
ctccaacaaaatatctacaataatatgaaaaattaacttgaacagagaaaaatannnnnnncaagtaatcttcaaatggtgtcaactttggtctggggtt |
105 |
Q |
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| T |
51669291 |
ctccaacaaaatatctacaataatatgaaaaattaacttgaacagagaaaaatatttttttcaagtaatcttcaaatggtgtcaactttggtctggggtt |
51669192 |
T |
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| Q |
106 |
tctttttccaattttgctttcatggcccatttgatctcgcaaaagt----------gcttatcttttgagctttggtcaatcttttctcacatgttaaca |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51669191 |
tctttttccaattttgctttcatggcccatttgatctcgcaaaagtatgcaaaagtgcttatcttttgagctttggtcaatcttttctcacatgttaaca |
51669092 |
T |
|
| Q |
196 |
aagttggtatgcctaaaactttttagatattgtaagacacgagatgaaatccatttgttcaaaaagataaaataccttcgaagtcaattttaccggatcc |
295 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51669091 |
aagtgggtatgcctaaaactttttagatattgcaagacacgagatgaaatccatttgttcaaaaagataaaataccttcgaagtcaattttaccggatcc |
51668992 |
T |
|
| Q |
296 |
actactaactttagattcacttggaacttcctctggaaaaacggaagtgggttttgttgtctctacatttacaatgtgtggatatttctcgtgtctttta |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
51668991 |
actactaactttagattcacttggaacttcctctggaaaaacggaagtgggttttgttgtctctacatttacaatgtgtagatatttctcatgtctttta |
51668892 |
T |
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| Q |
396 |
aaatgtcggccctgaataaaaatctagttagatatgtttcatataaatcaagtatatcatatcacggtgcatgagtttgacggtctacctttggaagctc |
495 |
Q |
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| T |
51668891 |
aaatgtcggccctgaataaaaatctagttagatatgtttcacataaatcaagtatatcatatcacggtgcatgagtttgacggtctacctttggaagctc |
51668792 |
T |
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| Q |
496 |
gtttctacgccttatagatgatgtgctccatccaactagctctatttaggagtcaagttattcatgtaaacttatggacagtagaatttaatggcgataa |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
51668791 |
gtttctacgccttatagatgatgtgctccatccaactagctctatttaggagtcaagttattcatgtaaacttacagacagtagaatttaattgcgataa |
51668692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 594 - 712
Target Start/End: Original strand, 53842667 - 53842785
Alignment:
| Q |
594 |
aaaaagaagaatatgataaaagaaaaaagaggaattatcagcacgaggatacgccagttaataacagaagaccgtttagtaaatggatacattgattttg |
693 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
53842667 |
aaaaagaagaatatgataaaagaaaaaagaggaattatcaacacaaggatacgccaattaatatcagaaaaccgtttagtaaatggatacattgattttg |
53842766 |
T |
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| Q |
694 |
taggactctttatcatctt |
712 |
Q |
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||||||||||||||||||| |
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| T |
53842767 |
taggactctttatcatctt |
53842785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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