View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_24 (Length: 469)

Name: NF1404_low_24
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_24
NF1404_low_24
[»] chr6 (1 HSPs)
chr6 (89-459)||(2139828-2140195)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 89 - 459
Target Start/End: Complemental strand, 2140195 - 2139828
Alignment:
Q  89 ttacatagttcacctgcaccaaatattttaatttttcaaacttctttttaacnnnnnnntatgctaccatctaacattatgttaatgcttaaattgataa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  2140195 ttacatagttcacctgcaccaaatattttaatttttcaaacttctttttaacaaaataatatgctaccatctaacattatgttaatgcttaaattgataa 2140096  T
Q  189 tgactttagcaaaatcattgtcatttagtaattttgttaaaatttaagtataatttttgctcaaattgtggtgtaattatatcaaattcatgcaaatata 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2140095 tgactttagcaaaatcattgtcatttagtaattttgttaaaatttaagtataatttttgctcaaattgtggtgtaattatatcaaattcatgcaaatata 2139996  T
Q  289 agtctacttaatttccttnnnnnnnnnnnnnngtctacttaattagatcaaatttacttcgtgaaatca-nnnnnnnnnnnnnatattccatgcagagta 387  Q
    ||||||||||||||||||              |||||||||||||||||||||||||||||||||||||              |||||||| ||||||||    
T  2139995 agtctacttaatttcctt-aaaaaaaaaaaaagtctacttaattagatcaaatttacttcgtgaaatcattttttttttttttatattccacgcagagta 2139897  T
Q  388 ataaaatcaaaatgaaaaataactagagattttgattaagtaattataagagacctttttgaaatcttcatc 459  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  2139896 ataaaatcaaaatgaaaaataactagagattttgattaag---ttataagagacctttttaaaatcttcatc 2139828  T

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