View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_25 (Length: 465)

Name: NF1404_low_25
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_25
NF1404_low_25
[»] chr4 (20 HSPs)
chr4 (99-300)||(54985928-54986129)
chr4 (379-465)||(26393100-26393186)
chr4 (380-465)||(3533582-3533667)
chr4 (379-465)||(56000344-56000430)
chr4 (399-465)||(28103479-28103545)
chr4 (379-461)||(29663703-29663785)
chr4 (413-465)||(15787509-15787561)
chr4 (398-465)||(11113799-11113866)
chr4 (399-465)||(31711149-31711215)
chr4 (379-461)||(56296254-56296336)
chr4 (385-465)||(11114959-11115039)
chr4 (413-465)||(33377371-33377423)
chr4 (415-465)||(5687232-5687282)
chr4 (415-465)||(27408820-27408870)
chr4 (379-465)||(52660187-52660273)
chr4 (416-465)||(34438463-34438512)
chr4 (413-465)||(1273440-1273492)
chr4 (413-465)||(37560306-37560358)
chr4 (413-465)||(53400242-53400294)
chr4 (413-461)||(55953859-55953907)
[»] chr2 (5 HSPs)
chr2 (170-285)||(7883510-7883625)
chr2 (395-465)||(23177731-23177801)
chr2 (395-465)||(23588988-23589058)
chr2 (379-465)||(7037023-7037109)
chr2 (413-465)||(2581860-2581912)
[»] chr8 (17 HSPs)
chr8 (379-465)||(24069419-24069505)
chr8 (379-465)||(7770871-7770956)
chr8 (379-465)||(7796781-7796866)
chr8 (379-465)||(39515256-39515342)
chr8 (379-465)||(7816062-7816147)
chr8 (385-465)||(37472460-37472540)
chr8 (413-465)||(38591014-38591066)
chr8 (379-464)||(8095404-8095489)
chr8 (413-465)||(31625391-31625443)
chr8 (413-465)||(43275807-43275859)
chr8 (379-465)||(13367023-13367109)
chr8 (379-461)||(35943969-35944051)
chr8 (415-465)||(39546686-39546736)
chr8 (396-465)||(29738348-29738417)
chr8 (413-465)||(36070235-36070287)
chr8 (413-465)||(37274944-37274996)
chr8 (413-465)||(37276250-37276302)
[»] chr3 (8 HSPs)
chr3 (379-464)||(21127983-21128068)
chr3 (172-283)||(18396534-18396645)
chr3 (379-465)||(51400272-51400358)
chr3 (379-464)||(43346420-43346505)
chr3 (379-465)||(48254862-48254947)
chr3 (379-464)||(12062357-12062442)
chr3 (413-465)||(47855345-47855397)
chr3 (413-465)||(54653973-54654025)
[»] chr1 (10 HSPs)
chr1 (385-465)||(13930654-13930734)
chr1 (385-465)||(14071182-14071262)
chr1 (413-465)||(3979320-3979372)
chr1 (425-465)||(47411467-47411507)
chr1 (415-465)||(13641314-13641364)
chr1 (413-465)||(25786025-25786077)
chr1 (413-465)||(25787171-25787223)
chr1 (413-465)||(26056154-26056206)
chr1 (413-465)||(42248312-42248364)
chr1 (413-465)||(47136694-47136746)
[»] chr7 (8 HSPs)
chr7 (379-465)||(46458686-46458772)
chr7 (399-465)||(24873590-24873656)
chr7 (379-465)||(45719672-45719758)
chr7 (413-465)||(19278410-19278462)
chr7 (425-465)||(22746339-22746379)
chr7 (425-465)||(43007668-43007708)
chr7 (413-465)||(46673547-46673598)
chr7 (413-465)||(46674941-46674993)
[»] chr6 (7 HSPs)
chr6 (399-465)||(31740265-31740331)
chr6 (413-465)||(8412323-8412375)
chr6 (385-465)||(31738420-31738500)
chr6 (379-465)||(293613-293699)
chr6 (415-465)||(22299912-22299962)
chr6 (413-465)||(5311336-5311388)
chr6 (413-465)||(8411143-8411195)
[»] chr5 (12 HSPs)
chr5 (379-464)||(15856592-15856676)
chr5 (399-465)||(12936095-12936161)
chr5 (414-464)||(22819557-22819607)
chr5 (379-464)||(12830911-12830996)
chr5 (379-464)||(12862891-12862976)
chr5 (396-465)||(19525278-19525347)
chr5 (399-465)||(12950253-12950319)
chr5 (415-465)||(19827149-19827199)
chr5 (396-465)||(12933808-12933877)
chr5 (396-465)||(12947969-12948038)
chr5 (416-465)||(42510171-42510220)
chr5 (413-465)||(15613562-15613614)
[»] scaffold1974 (1 HSPs)
scaffold1974 (415-465)||(637-687)
[»] scaffold1878 (1 HSPs)
scaffold1878 (415-465)||(587-637)
[»] scaffold0290 (1 HSPs)
scaffold0290 (415-465)||(9487-9537)
[»] scaffold2127 (1 HSPs)
scaffold2127 (413-465)||(522-574)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 99 - 300
Target Start/End: Original strand, 54985928 - 54986129
Alignment:
Q  99 ttcttctatcatagtagattgaggtgatattggatgctgaatctgtattttgtttgactgatcttatctacgtttcagggtttatgggggctatgatatc 198  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54985928 ttcttctatcatagtagattgagttgatataggatgctgaatctgtattttgtttgactgatcttatctatgtttcagggtttatgggggctatgatatc 54986027  T
Q  199 caatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatgaactactatgcttgtctctccatattatct 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54986028 caatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatgaactactatgcttgtctctccatattatct 54986127  T
Q  299 ct 300  Q
    ||    
T  54986128 ct 54986129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 26393100 - 26393186
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| ||||||||||||||||||||||||| ||  | |||| |||||||||| || ||| ||||||||||||||||||||||||||    
T  26393100 caccttagacatttagtgttaaaaacagacggaagtgtccaaaatggtaaacgacagaagagttatgggaccaaattgagacacttt 26393186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 465
Target Start/End: Original strand, 3533582 - 3533667
Alignment:
Q  380 acctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||| |||||||||||||||||||| |||| |||||||||| ||||||||| | | ||| ||||| ||||||||||||||||||||    
T  3533582 accttagacatttagtgttaaaaactgacggaaaggaccaaaatggtaaacagtagaagagttatcggaccaaattgagacacttt 3533667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 465
Target Start/End: Complemental strand, 56000430 - 56000344
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| |||||||||||||||||||| || | ||| |||||| ||||||||||||| ||| ||||| |||| |||||||||||||||    
T  56000430 caccttagacatttagtgttaaaaactgatggaaaagaccaaaatggtaaacggcagaagagttataggactaaattgagacacttt 56000344  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 465
Target Start/End: Original strand, 28103479 - 28103545
Alignment:
Q  399 aaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||| ||| |||||||||| ||||||||||||| |||  |||||||||||||||||||||||||    
T  28103479 aaaaacaaacggaaaggaccaaaatggtaaacggcagaagtcttatgggaccaaattgagacacttt 28103545  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 461
Target Start/End: Complemental strand, 29663785 - 29663703
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagaca 461  Q
    ||||| ||||||||| ||||||||  | ||| ||| || ||| ||||||||||||| ||| ||||||||||||||||||||||    
T  29663785 caccttagacatttaatgttaaaattaaacggaaaagatcaaaatggtaaacggcagaagagttatgggaccaaattgagaca 29663703  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 15787509 - 15787561
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| ||||||||||||| ||  ||||||||||||||||||||||||||    
T  15787509 aggaccaaaatggtaaacggcaaaaaagttatgggaccaaattgagacacttt 15787561  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 398 - 465
Target Start/End: Complemental strand, 11113866 - 11113799
Alignment:
Q  398 taaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||  ||| ||| |||||| ||||||||||||| ||| |||||| |||||||||||||||||||    
T  11113866 taaaaactaacggaaatgaccaaaatggtaaacggcagaagagttatgagaccaaattgagacacttt 11113799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 465
Target Start/End: Complemental strand, 31711215 - 31711149
Alignment:
Q  399 aaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||| ||| |||||| ||| |||||||||| ||||||  ||||| |||||||||||||||||||    
T  31711215 aaaaacaaacggaaaggatcaaaatggtaaacgacataagacttatgagaccaaattgagacacttt 31711149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 461
Target Start/End: Complemental strand, 56296336 - 56296254
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagaca 461  Q
    ||||| |||||||||| |||||||||| ||| |||  ||||| |||||||||| || |||  ||||||||||||||| |||||    
T  56296336 caccttagacatttagggttaaaaacaaacggaaattaccaaaatggtaaacgacaaaagaattatgggaccaaattaagaca 56296254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 11114959 - 11115039
Alignment:
Q  385 agacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||||  |||||||||  ||| | ||| |||| |||||||||| || ||| |||||||||||||||||||| |||||    
T  11114959 agacatttaaggttaaaaactaacggagaggtccaaaatggtaaacgacagaagagttatgggaccaaattgagatacttt 11115039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 33377371 - 33377423
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || |||||||||| |||  |||||||||||||||||||||||||    
T  33377371 aggaccaaaatagtaaacggcagaagatttatgggaccaaattgagacacttt 33377423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 5687282 - 5687232
Alignment:
Q  415 gaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||| || |||||||||| |||  |||||||||||||||||||||||||    
T  5687282 gaccaaaatagtaaacggcaaaagatttatgggaccaaattgagacacttt 5687232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 27408870 - 27408820
Alignment:
Q  415 gaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||| ||||||||||| | |||  |||||||||||||||||||||||||    
T  27408870 gaccaaaatggtaaacggaagaagatttatgggaccaaattgagacacttt 27408820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 52660187 - 52660273
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||||||||||  |||||||||| ||  ||| || ||| ||||||||||||| |||  |||||||||| |||| ||| |||||    
T  52660187 cacctaagacatttaaggttaaaaacaaacagaaatgatcaaaatggtaaacggcagaagatttatgggaccgaattaagatacttt 52660273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 465
Target Start/End: Complemental strand, 34438512 - 34438463
Alignment:
Q  416 accaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| || |||||||||| |||  |||||||||||||||||||||||||    
T  34438512 accaaaatagtaaacggcagaagatttatgggaccaaattgagacacttt 34438463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 1273440 - 1273492
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || | ||||| ||||||  |||||||||||||||||||||||||    
T  1273440 aggaccaaaatagcaaacgacataagacttatgggaccaaattgagacacttt 1273492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 37560306 - 37560358
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || ||||||| | ||||  |||||||||||||||||||||||||    
T  37560306 aggaccaagatagtaaacgtcgtaagatttatgggaccaaattgagacacttt 37560358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 53400294 - 53400242
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| || |||||||||| ||||||  |||| ||||||||||||||||||||    
T  53400294 aggactaaaatggtaaacgacataagatttataggaccaaattgagacacttt 53400242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 461
Target Start/End: Original strand, 55953859 - 55953907
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagaca 461  Q
    |||||||| || ||||||||||||||  ||| |||||||||||||||||    
T  55953859 aggaccaaaatagtaaacggcataagatttacgggaccaaattgagaca 55953907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 7883510 - 7883625
Alignment:
Q  170 gtttcagggtttatgggggctatgatatccaatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatga 269  Q
    |||||||| |||||||| ||||||||||| ||| |||| ||||| ||||||||||||||||||||||| |||||||| ||||||  ||||||||||||||    
T  7883510 gtttcaggatttatgggagctatgatatcaaatttggcatttgtatttaggaatatattctcaaagaaaggaatgaatggaatgagtgttagtggaatga 7883609  T
Q  270 actactatgcttgtct 285  Q
    |||| |||||||||||    
T  7883610 actattatgcttgtct 7883625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 23177801 - 23177731
Alignment:
Q  395 tgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||||||  ||| | |||||||| ||||||||||||| |||  |||||||||||||||||||||||||    
T  23177801 tgttaaaaactaacggagaggaccaaaatggtaaacggcagaagatttatgggaccaaattgagacacttt 23177731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 23589058 - 23588988
Alignment:
Q  395 tgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||||||  ||| | |||||||| ||||||||||||| |||  |||||||||||||||||||||||||    
T  23589058 tgttaaaaactaacggagaggaccaaaatggtaaacggcagaagatttatgggaccaaattgagacacttt 23588988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 465
Target Start/End: Complemental strand, 7037109 - 7037023
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| ||| |||||  |||||||| | ||| ||| |||||| ||||||||||||| |||  ||||||||||||||||| |||||||    
T  7037109 caccttagatatttaaggttaaaaataaacggaaatgaccaaaatggtaaacggcagaagacttatgggaccaaattgaaacacttt 7037023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 2581912 - 2581860
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || ||||||||| ||||  |||||||||||||||||||||||||    
T  2581912 aggaccaagatagtaaacggcgtaagatttatgggaccaaattgagacacttt 2581860  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 24069419 - 24069505
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  24069419 caccttagacatttagtgttaaaaacagacggaaaggaccaaaatggtaaacggcagaagagttatgggaccaaattgagacacttt 24069505  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 7770871 - 7770956
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| ||||||||||||||||||||||||| ||| |||||| ||| | ||||||||||| |||||| ||||||||||| |||||||    
T  7770871 caccttagacatttagtgttaaaaacagacgaaaatgaccaaaatgat-aacggcataagagttatgagaccaaattgaaacacttt 7770956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 7796781 - 7796866
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| ||||||||||||||||||||||||| ||| |||||| ||| | ||||||| ||| |||||| |||||||||||||||||||    
T  7796781 caccttagacatttagtgttaaaaacagacgaaaatgaccaaaatgat-aacggcagaagagttatgagaccaaattgagacacttt 7796866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 465
Target Start/End: Complemental strand, 39515342 - 39515256
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| ||||||||||||||||||| ||||| ||| |||||| | |||||| |||| ||| |||||| |||||||||||||||||||    
T  39515342 caccttagacatttagtgttaaaaatagacggaaatgaccaaaaaggtaaatggcaaaagagttatgagaccaaattgagacacttt 39515256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 7816062 - 7816147
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| ||||||||||||||||||||||||| ||| |||||| ||| | ||||||| |||  ||||| |||||||||||||||||||    
T  7816062 caccttagacatttagtgttaaaaacagacgaaaatgaccaaaatgat-aacggcagaagaattatgagaccaaattgagacacttt 7816147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 465
Target Start/End: Complemental strand, 37472540 - 37472460
Alignment:
Q  385 agacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||||  |||||||| | | | |||||||||| |||||||||| || |||  |||||||||||||||||||||||||    
T  37472540 agacatttaaggttaaaaataaatggaaaggaccaaaatggtaaacgacaaaagacttatgggaccaaattgagacacttt 37472460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 38591014 - 38591066
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || ||||||||||||||  |||||||||||||||||||||||||    
T  38591014 aggaccaaaatagtaaacggcataagatttatgggaccaaattgagacacttt 38591066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 8095489 - 8095404
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacactt 464  Q
    ||||| |||||||||   ||||||||  ||| |||||||||| || ||||||| || ||| || ||||||||||||||||||||||    
T  8095489 caccttagacatttaagattaaaaactaacggaaaggaccaaaatagtaaacgacaaaagagtaatgggaccaaattgagacactt 8095404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 31625391 - 31625443
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || |||||||||| |||  |||||||||||||||||||||||||    
T  31625391 aggaccaaaatagtaaacggcaaaagatttatgggaccaaattgagacacttt 31625443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 43275859 - 43275807
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| ||  ||||||||||||| |||||||||| |||||||||||||||    
T  43275859 aggaccaaaataataaacggcataagagttatgggactaaattgagacacttt 43275807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 13367023 - 13367109
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| |||||||||  |||||||||  ||| | |||||||| || |||||||||| |||  ||||||||||||||| | |||||||    
T  13367023 caccttagacatttaaggttaaaaactaacggagaggaccaaaatagtaaacggcagaagatttatgggaccaaattaaaacacttt 13367109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 461
Target Start/End: Complemental strand, 35944051 - 35943969
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagaca 461  Q
    ||||| |||||||||  |||||||||  ||| | | |||||| || |||||| |||||||  |||||||||||||||||||||    
T  35944051 caccttagacatttaaagttaaaaactaacggagatgaccaaaatagtaaactgcataagatttatgggaccaaattgagaca 35943969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 39546686 - 39546736
Alignment:
Q  415 gaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||| | ||||||||||||||   |||||||||||||||||||||||||    
T  39546686 gaccaaaacggtaaacggcataatatttatgggaccaaattgagacacttt 39546736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 465
Target Start/End: Complemental strand, 29738417 - 29738348
Alignment:
Q  396 gttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||||| ||| | |||||||| | ||||||||||| |||  ||||| ||| |||||||||||||||    
T  29738417 gttaaaaacaaacggagaggaccaaaaaggtaaacggcagaagacttatgagactaaattgagacacttt 29738348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 36070287 - 36070235
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || |||||||||| |||  |||||||| ||||||||||||||||    
T  36070287 aggaccaaaatagtaaacggcagaagatttatgggatcaaattgagacacttt 36070235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 37274996 - 37274944
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || |||||||||| |||  |||||||| ||||||||||||||||    
T  37274996 aggaccaaaatagtaaacggcagaagatttatgggaacaaattgagacacttt 37274944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 37276250 - 37276302
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| ||  ||||||||| |||  |||||||||||||||||||||||||    
T  37276250 aggaccaatataataaacggcaaaagatttatgggaccaaattgagacacttt 37276302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 21128068 - 21127983
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacactt 464  Q
    ||||| |||||||||| |||||||||||||| ||| |||||| ||||||||||||| ||| |||||||||||||||||| ||||||    
T  21128068 caccttagacatttagggttaaaaacagacggaaatgaccaaaatggtaaacggcagaagagttatgggaccaaattgacacactt 21127983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 283
Target Start/End: Original strand, 18396534 - 18396645
Alignment:
Q  172 ttcagggtttatgggggctatgatatccaatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatgaac 271  Q
    |||||| |||||||||||||||||||| ||| |||| ||||||||  | || || ||||| || ||||| ||||| |||| ||||||||||||||||||     
T  18396534 ttcaggttttatgggggctatgatatcaaatctggcatttgtgttccgcaacatcttctcgaaaaaggggatgaagggaaagtctgttagtggaatgaat 18396633  T
Q  272 tactatgcttgt 283  Q
    ||||||||||||    
T  18396634 tactatgcttgt 18396645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 465
Target Start/End: Complemental strand, 51400358 - 51400272
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||||||||||| ||||||||||| ||| |||||||||| |||||| |||||  ||   ||||||||| |||||||||||||||    
T  51400358 cacctaagacatttaatgttaaaaacaaacggaaaggaccaaaatggtatacggctgaaaatttatgggactaaattgagacacttt 51400272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 43346420 - 43346505
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacactt 464  Q
    ||||| |||||||||| |||||||||||||| ||| |||||| ||| |||||| || ||| |||||| ||||||||||| ||||||    
T  43346420 caccttagacatttagggttaaaaacagacgaaaatgaccaaaatgataaacgacagaagagttatgagaccaaattgacacactt 43346505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 48254862 - 48254947
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| ||||||||| ||||||||  ||||| |||  || || ||||||||||||| ||| |||||| ||||||| |||||||||||    
T  48254862 caccttagacatttaatgttaaaattagacggaaaaaactaaaatggtaaacggcagaagagttatgtgaccaaa-tgagacacttt 48254947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 12062357 - 12062442
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacactt 464  Q
    ||||| |||||||||  |||||||||  | | ||| |||||| || |||||| ||| ||| || ||||||||||||||||||||||    
T  12062357 caccttagacatttaaggttaaaaactaatggaaatgaccaaaatagtaaacagcaaaagagtaatgggaccaaattgagacactt 12062442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 47855345 - 47855397
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || |||||||||| |||  |||| ||||||||||||||||||||    
T  47855345 aggaccaaaatagtaaacggcagaagatttataggaccaaattgagacacttt 47855397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 54653973 - 54654025
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || ||||||| || |||  |||||||||||||||||||||||||    
T  54653973 aggaccaaaatagtaaacgacagaagaattatgggaccaaattgagacacttt 54654025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 13930654 - 13930734
Alignment:
Q  385 agacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||||  |||||||||| ||| |||||||||| |||||||||| ||||||  |||||||||||||||||||||||||    
T  13930654 agacatttaaggttaaaaacaaacggaaaggaccaaaatggtaaacgacataagacttatgggaccaaattgagacacttt 13930734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 14071182 - 14071262
Alignment:
Q  385 agacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||||  |||||||||| ||| |||||||||| |||||||||| || |||  |||||||||||||||||||||||||    
T  14071182 agacatttaaggttaaaaacaaacggaaaggaccaaaatggtaaacgacagaagacttatgggaccaaattgagacacttt 14071262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 3979320 - 3979372
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || |||||||||| |||  |||||||||||||||||||||||||    
T  3979320 aggaccaaaatagtaaacggcagaagaattatgggaccaaattgagacacttt 3979372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 465
Target Start/End: Original strand, 47411467 - 47411507
Alignment:
Q  425 gtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  47411467 gtaaacggcataagatttatgggaccaaattgagacacttt 47411507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 13641364 - 13641314
Alignment:
Q  415 gaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||| || |||||||||| |||  |||||||||||||||||||||||||    
T  13641364 gaccaaaatagtaaacggcagaagatttatgggaccaaattgagacacttt 13641314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 25786077 - 25786025
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| ||  |||||| ||||||  |||||||||||||||||||||||||    
T  25786077 aggaccaaaataataaacgacataagatttatgggaccaaattgagacacttt 25786025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 25787171 - 25787223
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || ||||| ||||||||  ||||| |||||||||||||||||||    
T  25787171 aggaccaaaatagtaaatggcataagatttatgagaccaaattgagacacttt 25787223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 26056154 - 26056206
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || ||||||| || |||  |||||||||||||||||||||||||    
T  26056154 aggaccaaaatagtaaacgacaaaagatttatgggaccaaattgagacacttt 26056206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 42248312 - 42248364
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| || |||||||||| ||||||  |||| ||||||||||||||||||||    
T  42248312 aggactaaaatggtaaacgacataagatttataggaccaaattgagacacttt 42248364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 47136694 - 47136746
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || ||||||||||||||  |||||  ||||||||||||||||||    
T  47136694 aggaccaaaatagtaaacggcataagatttatgacaccaaattgagacacttt 47136746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 46458686 - 46458772
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| |||||||||  |||||||||| ||| | |||||||| ||||||||||| | |||  |||||||||||||||||||||||||    
T  46458686 caccttagacatttaaggttaaaaacaaacggagaggaccaaaatggtaaacggaagaagatttatgggaccaaattgagacacttt 46458772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 399 - 465
Target Start/End: Original strand, 24873590 - 24873656
Alignment:
Q  399 aaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||| ||| ||| |||||| ||||||||||||| |||  |||||||||||||||||||||||||    
T  24873590 aaaaacaaacggaaatgaccaaaatggtaaacggcagaagacttatgggaccaaattgagacacttt 24873656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 465
Target Start/End: Complemental strand, 45719758 - 45719672
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| |||||||||||||||||||| |||| |||  ||||| |||||||||  || ||| |||||| ||||||||| |||||||||    
T  45719758 caccttagacatttagtgttaaaaactgacgaaaaaaaccaaaatggtaaacaacagaagagttatgagaccaaatttagacacttt 45719672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 19278462 - 19278410
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || |||||||||| |||  |||||||||||||||||||||||||    
T  19278462 aggaccaaaatagtaaacggcagaagaattatgggaccaaattgagacacttt 19278410  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 425 - 465
Target Start/End: Original strand, 22746339 - 22746379
Alignment:
Q  425 gtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||||| |||  |||||||||||||||||||||||||    
T  22746339 gtaaacggcacaagatttatgggaccaaattgagacacttt 22746379  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 425 - 465
Target Start/End: Original strand, 43007668 - 43007708
Alignment:
Q  425 gtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||| ||||||  |||||||||||||||||||||||||    
T  43007668 gtaaacgacataagacttatgggaccaaattgagacacttt 43007708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 46673598 - 46673547
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||||||| ||||||| ||||||  ||||||||||||||||| |||||||    
T  46673598 aggaccaacatagtaaacg-cataagatttatgggaccaaattgaaacacttt 46673547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 46674941 - 46674993
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || |||||||||| |||  |||||||||||||| ||||||||||    
T  46674941 aggaccaaaatagtaaacggcaaaagatttatgggaccaaatcgagacacttt 46674993  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 465
Target Start/End: Original strand, 31740265 - 31740331
Alignment:
Q  399 aaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||| ||| | |||||||| |||||||||||||||||  |||||||||||||||||||||||||    
T  31740265 aaaaacaaacggataggaccaaaatggtaaacggcataagatttatgggaccaaattgagacacttt 31740331  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 8412323 - 8412375
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || |||||||||| |||  |||||||||||||||||||||||||    
T  8412323 aggaccaaaatagtaaacggcacaagatttatgggaccaaattgagacacttt 8412375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 465
Target Start/End: Complemental strand, 31738500 - 31738420
Alignment:
Q  385 agacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||||  |||||||||  ||| | |||||||| ||||||||| ||| |||  ||||||||||||||||| |||||||    
T  31738500 agacatttaaggttaaaaactaacggagaggaccaaaatggtaaaccgcagaagacttatgggaccaaattgaaacacttt 31738420  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 293613 - 293699
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| |||||||||  |||||||| | ||| | |||||||| |||||||||| || |||  ||||| ||||||||||| |||||||    
T  293613 caccttagacatttaaggttaaaaataaacggagaggaccaaaatggtaaacgacagaagacttatgagaccaaattgaaacacttt 293699  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 22299912 - 22299962
Alignment:
Q  415 gaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||| || |||||||||| |||  |||||||||||||||||||||||||    
T  22299912 gaccaaaatagtaaacggcagaagatttatgggaccaaattgagacacttt 22299962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 5311388 - 5311336
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || ||||||| ||||||  |||| ||||||||||||||||||||    
T  5311388 aggaccaaaatagtaaacgacataagatttataggaccaaattgagacacttt 5311336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 8411195 - 8411143
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || ||||||||||||||  ||||  |||||||||||||||||||    
T  8411195 aggaccaaaatagtaaacggcataagatttataagaccaaattgagacacttt 8411143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 15856676 - 15856592
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacactt 464  Q
    ||||| |||||||||| |||||||||| ||| ||| |||||| ||||||||||||| ||| ||||| ||| |||||||| ||||||    
T  15856676 caccttagacatttagggttaaaaacaaacgaaaatgaccaaaatggtaaacggcagaagagttat-ggatcaaattgatacactt 15856592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 465
Target Start/End: Original strand, 12936095 - 12936161
Alignment:
Q  399 aaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||| ||| ||| |||||| ||||||||| |||||||  |||| ||||||||||||||||||||    
T  12936095 aaaaacaaacggaaatgaccaaaatggtaaacagcataagacttattggaccaaattgagacacttt 12936161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 22819557 - 22819607
Alignment:
Q  414 ggaccaacatggtaaacggcataagcgttatgggaccaaattgagacactt 464  Q
    ||||||| || |||||||||| ||| |||||||||||||||||||||||||    
T  22819557 ggaccaaaatagtaaacggcagaagagttatgggaccaaattgagacactt 22819607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 12830911 - 12830996
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacactt 464  Q
    ||||||||| |||||| ||||||||   ||| | |||||||| || |||||| ||| ||| ||||| |||||||||||||||||||    
T  12830911 cacctaagatatttagggttaaaaattaacggagaggaccaaaatagtaaacagcagaagagttataggaccaaattgagacactt 12830996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 12862891 - 12862976
Alignment:
Q  379 cacctaagacatttagtgttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacactt 464  Q
    ||||||||| |||||| ||||||||   ||| | |||||||| || |||||| ||| ||| ||||| |||||||||||||||||||    
T  12862891 cacctaagatatttagggttaaaaattaacggagaggaccaaaatagtaaacagcagaagagttataggaccaaattgagacactt 12862976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 465
Target Start/End: Original strand, 19525278 - 19525347
Alignment:
Q  396 gttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||||| ||| | |||||||| ||||||||||||| |||  ||||| |||||||| ||||||||||    
T  19525278 gttaaaaacaaacggagaggaccaaaatggtaaacggcagaagacttatgtgaccaaatggagacacttt 19525347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 465
Target Start/End: Original strand, 12950253 - 12950319
Alignment:
Q  399 aaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||||| ||| ||| |||||| |||||||||  ||||||  |||| ||||||||||||||||||||    
T  12950253 aaaaacaaacggaaatgaccaaaatggtaaacatcataagacttattggaccaaattgagacacttt 12950319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 19827149 - 19827199
Alignment:
Q  415 gaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||| ||||||||||| | |||  |||||||||||||||||||||||||    
T  19827149 gaccaaaatggtaaacggaagaagatttatgggaccaaattgagacacttt 19827199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 465
Target Start/End: Complemental strand, 12933877 - 12933808
Alignment:
Q  396 gttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| | ||| |||||||| | ||||||||||||| |||  ||||| || ||||||||||||||||    
T  12933877 gttaaaaataaacggaaaggaccgaaatggtaaacggcagaagacttatgagatcaaattgagacacttt 12933808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 465
Target Start/End: Complemental strand, 12948038 - 12947969
Alignment:
Q  396 gttaaaaacagacgcaaaggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| | ||| |||||||| | |||||||||| ||||||  ||||| || ||||||||||||||||    
T  12948038 gttaaaaataaacggaaaggaccgaaatggtaaacgacataagacttatgagatcaaattgagacacttt 12947969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 465
Target Start/End: Complemental strand, 42510220 - 42510171
Alignment:
Q  416 accaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    ||||| || |||||||||| |||  |||||||||||||||||||||||||    
T  42510220 accaaaatagtaaacggcagaagatttatgggaccaaattgagacacttt 42510171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 15613614 - 15613562
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || |||||||| | |||  |||||||||||||||||||||||||    
T  15613614 aggaccaaaatagtaaacggaagaagatttatgggaccaaattgagacacttt 15613562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 637 - 687
Alignment:
Q  415 gaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||| ||||||||||||| |||  ||||||||| |||||||||||||||    
T  637 gaccaaaatggtaaacggcagaagatttatgggactaaattgagacacttt 687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 637 - 587
Alignment:
Q  415 gaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||| ||||||||||||| |||  ||||||||| |||||||||||||||    
T  637 gaccaaaatggtaaacggcagaagatttatgggactaaattgagacacttt 587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 9487 - 9537
Alignment:
Q  415 gaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||| ||||||||||||| |||  ||||||||| |||||||||||||||    
T  9487 gaccaaaatggtaaacggcagaagatttatgggactaaattgagacacttt 9537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2127 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 522 - 574
Alignment:
Q  413 aggaccaacatggtaaacggcataagcgttatgggaccaaattgagacacttt 465  Q
    |||||||| || ||||||||||||||  |||||  ||||||||||||||||||    
T  522 aggaccaaaatagtaaacggcataagatttatgacaccaaattgagacacttt 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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