View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_26 (Length: 462)

Name: NF1404_low_26
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_26
NF1404_low_26
[»] chr1 (2 HSPs)
chr1 (40-449)||(9581893-9582298)
chr1 (262-422)||(9587478-9587638)
[»] chr5 (1 HSPs)
chr5 (261-310)||(29022133-29022182)
[»] chr4 (5 HSPs)
chr4 (269-316)||(533098-533145)
chr4 (344-390)||(548271-548317)
chr4 (261-322)||(645434-645495)
chr4 (272-313)||(6007763-6007804)
chr4 (269-313)||(1547373-1547417)
[»] chr8 (1 HSPs)
chr8 (266-311)||(17642611-17642656)
[»] chr7 (1 HSPs)
chr7 (261-322)||(15091276-15091337)
[»] chr2 (1 HSPs)
chr2 (280-321)||(13641998-13642039)
[»] chr6 (1 HSPs)
chr6 (334-402)||(10578786-10578854)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 40 - 449
Target Start/End: Complemental strand, 9582298 - 9581893
Alignment:
Q  40 ccttccttcttatttgaaaccctaaccctatcagaacaaactcctgttgttaaatcgcaagacgaacaccacgaagcaagcttgcttcacaaggcagtca 139  Q
    ||||||| |||||||||||||||||||||| |||| |||||| ||||||||||| | |||||||||||||||    ||||||||||||||||||||| ||    
T  9582298 ccttcctacttatttgaaaccctaaccctaacagaccaaactgctgttgttaaacctcaagacgaacaccac----caagcttgcttcacaaggcagcca 9582203  T
Q  140 cacaacctctctgctatctcaaacaatagtaaggttcagtcaccgatgactccttttagaaaaatatcaatgtctagtgactcaaaaagaagaagaaaaa 239  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  9582202 cacaacctctctgctatctcaaacaattgtaaggttcagtcatcgatgactccttatagaaaaatatcaatgtctagtgactcaaaaagaagaagaagaa 9582103  T
Q  240 acacaatggcggttccaccaacagatttttatttacctaacgagtgttgggaatccgtcttcaaattcctcatcgacgacaacgatgccaaccatggttt 339  Q
    || ||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||   |||| |||||||    
T  9582102 acgcaatggcggttgcagcaacagatttttatttacctaatgactgttgggaatccgtcttcaaattcctcattgacgacaacgacatcaacaatggttt 9582003  T
Q  340 ctatttgaagtctctttctgttgtctccaaacagttactctccattaccaacggtttcctattttctttggctgtgcctgcctgctgtgaatcaacacac 439  Q
    ||| || |||||||||||||| |||||||||||||| ||||| || ||||||||| ||||||||||||| || ||| |  || || |||||||||||| |    
T  9582002 ctacttcaagtctctttctgtcgtctccaaacagtttctctctatcaccaacggtctcctattttctttcgccgtgtcctccggcagtgaatcaacacgc 9581903  T
Q  440 cctcttccct 449  Q
    | ||||||||    
T  9581902 cttcttccct 9581893  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 262 - 422
Target Start/End: Complemental strand, 9587638 - 9587478
Alignment:
Q  262 agatttttatttacctaacgagtgttgggaatccgtcttcaaattcctcatcgacgacaacgatgccaaccatggtttctatttgaagtctctttctgtt 361  Q
    |||||||| |||||| || ||  |||||||||| |||||||||||| |||| |||| |||||| | |||| ||||| |||| || ||||||||||||||     
T  9587638 agatttttctttacccaatgaccgttgggaatctgtcttcaaattcttcatagacggcaacgacgtcaacgatggtgtctacttcaagtctctttctgtc 9587539  T
Q  362 gtctccaaacagttactctccattaccaacggtttcctattttctttggctgtgcctgcct 422  Q
    |||||||||||||| |||||| | ||||| ||| |||||||||||||||||||||||||||    
T  9587538 gtctccaaacagtttctctccgtcaccaatggtctcctattttctttggctgtgcctgcct 9587478  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 29022182 - 29022133
Alignment:
Q  261 cagatttttatttacctaacgagtgttgggaatccgtcttcaaattcctc 310  Q
    ||||| ||||||||||| ||||||||||||||| | ||||||||||||||    
T  29022182 cagatctttatttacctgacgagtgttgggaatgcatcttcaaattcctc 29022133  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 533145 - 533098
Alignment:
Q  269 tatttacctaacgagtgttgggaatccgtcttcaaattcctcatcgac 316  Q
    ||||||||  |||||||||||||||| |||||||||||| ||||||||    
T  533145 tatttacccgacgagtgttgggaatctgtcttcaaattcgtcatcgac 533098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 548317 - 548271
Alignment:
Q  344 ttgaagtctctttctgttgtctccaaacagttactctccattaccaa 390  Q
    ||||||||||| ||||||||||| |||||||| |||||||| |||||    
T  548317 ttgaagtctctctctgttgtctcaaaacagtttctctccatcaccaa 548271  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 645495 - 645434
Alignment:
Q  261 cagatttttatttacctaacgagtgttgggaatccgtcttcaaattcctcatcgacgacaac 322  Q
    ||||||||||||||||| | || ||||||| ||  ||||||| |||||||||| ||||||||    
T  645495 cagatttttatttaccttatgattgttgggtatgtgtcttcagattcctcatcaacgacaac 645434  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 6007804 - 6007763
Alignment:
Q  272 ttacctaacgagtgttgggaatccgtcttcaaattcctcatc 313  Q
    ||||||||||| |||||||||||  |||||||||||||||||    
T  6007804 ttacctaacgaatgttgggaatctatcttcaaattcctcatc 6007763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 1547373 - 1547417
Alignment:
Q  269 tatttacctaacgagtgttgggaatccgtcttcaaattcctcatc 313  Q
    ||||||||| ||||||||||||||||  ||||||||||| |||||    
T  1547373 tatttacctgacgagtgttgggaatctatcttcaaattcatcatc 1547417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 17642611 - 17642656
Alignment:
Q  266 ttttatttacctaacgagtgttgggaatccgtcttcaaattcctca 311  Q
    |||||||||||| | ||||||||||| || ||||||||||||||||    
T  17642611 ttttatttacctgatgagtgttgggagtctgtcttcaaattcctca 17642656  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 15091276 - 15091337
Alignment:
Q  261 cagatttttatttacctaacgagtgttgggaatccgtcttcaaattcctcatcgacgacaac 322  Q
    ||||||| ||||||||  | ||||||||||||| |||||||| |||| ||||| ||||||||    
T  15091276 cagatttctatttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgacaac 15091337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 13642039 - 13641998
Alignment:
Q  280 cgagtgttgggaatccgtcttcaaattcctcatcgacgacaa 321  Q
    ||||||||||||||| ||||||||||| |||||| |||||||    
T  13642039 cgagtgttgggaatcggtcttcaaatttctcatccacgacaa 13641998  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 402
Target Start/End: Original strand, 10578786 - 10578854
Alignment:
Q  334 tggtttctatttgaagtctctttctgttgtctccaaacagttactctccattaccaacggtttcctatt 402  Q
    ||||| ||||||||| ||||| ||| | ||||||||||| || |||||||| |||||| || |||||||    
T  10578786 tggttactatttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctatt 10578854  T

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