View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_29 (Length: 442)

Name: NF1404_low_29
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_29
NF1404_low_29
[»] chr4 (3 HSPs)
chr4 (34-403)||(21320471-21320840)
chr4 (358-391)||(31915758-31915791)
chr4 (337-373)||(41508857-41508893)
[»] chr2 (7 HSPs)
chr2 (331-394)||(30387362-30387425)
chr2 (331-403)||(2554341-2554413)
chr2 (330-378)||(38565819-38565867)
chr2 (331-403)||(41825711-41825783)
chr2 (331-396)||(25622111-25622176)
chr2 (331-380)||(30434722-30434771)
chr2 (331-403)||(41302039-41302111)
[»] chr8 (5 HSPs)
chr8 (329-378)||(28374113-28374162)
chr8 (330-378)||(11647857-11647905)
chr8 (330-383)||(9381588-9381641)
chr8 (338-383)||(23231752-23231797)
chr8 (331-403)||(35824402-35824474)
[»] chr7 (1 HSPs)
chr7 (331-403)||(8113252-8113324)
[»] chr3 (3 HSPs)
chr3 (334-378)||(33100183-33100227)
chr3 (332-378)||(11830148-11830194)
chr3 (338-380)||(40145782-40145824)
[»] chr5 (2 HSPs)
chr5 (331-396)||(33922125-33922190)
chr5 (330-403)||(13490664-13490736)
[»] chr6 (2 HSPs)
chr6 (332-380)||(31130240-31130288)
chr6 (331-396)||(11680223-11680288)
[»] chr1 (2 HSPs)
chr1 (334-378)||(47396850-47396894)
chr1 (337-377)||(9023738-9023778)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 34 - 403
Target Start/End: Complemental strand, 21320840 - 21320471
Alignment:
Q  34 tgaccaccaacaaggtaacaaatccaaaaacctacaatacattgtcaaataacagcaaattcatggccatttctagccacaaccatttctagccacgacc 133  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  21320840 tgaccaccaacaaggtaacgaatccaaaaatctacaatacattgtcaaataacagcaatttcatggccatttctagccacaaccatttctagccatgacc 21320741  T
Q  134 aggtctaacatatttgtccaatacatcagagacatgttggataaagaaaaagtagctcgagctcataagctagtcatcaagaccaagttaccaagaccag 233  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21320740 aggtctaacatatttgtccaatacatcagagacatgttggatcaagaaaaagtagctcgagctcataagctagtcatcaagactaagttaccaagaccag 21320641  T
Q  234 atccagacgaatcctagttttcgagccagctgccaccgtcatggatggagccagagctcacaacaactcaggccaacgtagcagctctggtgccgagcag 333  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||| ||| |||||||    
T  21320640 atccagacgaatcctagttttcgagccagctgccaccgtcgtggatggagccgaagctcacaacaactcaggccaacgtagcagctctagtgtcgagcag 21320541  T
Q  334 ggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatacgttataa 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21320540 ggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatacgttataa 21320471  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 31915791 - 31915758
Alignment:
Q  358 cttaggcataatatgagaaaatgaccatttacat 391  Q
    |||||||||||||||||||||||| |||||||||    
T  31915791 cttaggcataatatgagaaaatgatcatttacat 31915758  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 41508857 - 41508893
Alignment:
Q  337 cgttcctagagtttttcagatcttaggcataatatga 373  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  41508857 cgttcctagagttttacagaccttaggcataatatga 41508893  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 30387425 - 30387362
Alignment:
Q  331 cagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataat 394  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| ||  |||||||||    
T  30387425 cagggtcgttcctagagtttttcgggtcttaggcataatatgagaaaatggccccttacataat 30387362  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 2554413 - 2554341
Alignment:
Q  331 cagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatacgttataa 403  Q
    ||||| ||||||||| ||||| | || |||||||||||||||| |||| ||||  ||||||||||| ||||||    
T  2554413 cagggccgttcctagcgttttacggaccttaggcataatatgaaaaaaggaccccttacataatacattataa 2554341  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 38565819 - 38565867
Alignment:
Q  330 gcagggtcgttcctagagtttttcagatcttaggcataatatgagaaaa 378  Q
    |||||||| ||||||||||||| | | ||||||||||||||||||||||    
T  38565819 gcagggtcattcctagagttttacgggtcttaggcataatatgagaaaa 38565867  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 41825711 - 41825783
Alignment:
Q  331 cagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatacgttataa 403  Q
    ||||| ||||||||| ||||| | || |||||||||||||||| |||| ||||  ||||||||||| ||||||    
T  41825711 cagggccgttcctagcgttttacggaccttaggcataatatgaaaaaaggaccccttacataatacattataa 41825783  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 25622176 - 25622111
Alignment:
Q  331 cagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatac 396  Q
    |||||||||||||||||||||   | ||||| |||||||||||||||||| |   |||||||||||    
T  25622176 cagggtcgttcctagagttttaggggtcttaagcataatatgagaaaatgtctccttacataatac 25622111  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 30434722 - 30434771
Alignment:
Q  331 cagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatg 380  Q
    ||||| ||||||||||||||| ||| |||||| |||| ||||||||||||    
T  30434722 cagggccgttcctagagttttgcaggtcttagacatagtatgagaaaatg 30434771  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 41302039 - 41302111
Alignment:
Q  331 cagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatacgttataa 403  Q
    ||||| ||||||||||||||| | |  ||||||||||||||||||||| | ||  ||| ||||||||| ||||    
T  41302039 cagggccgttcctagagttttacgggccttaggcataatatgagaaaagggccccttatataatacgtcataa 41302111  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 28374113 - 28374162
Alignment:
Q  329 agcagggtcgttcctagagtttttcagatcttaggcataatatgagaaaa 378  Q
    ||||||| |||||||||||||||||| | |||||||||||||||||||||    
T  28374113 agcagggccgttcctagagtttttcaaaccttaggcataatatgagaaaa 28374162  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 11647857 - 11647905
Alignment:
Q  330 gcagggtcgttcctagagtttttcagatcttaggcataatatgagaaaa 378  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||||||    
T  11647857 gcagggtcgttcctagagttttacagaccttagacataatatgagaaaa 11647905  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 9381588 - 9381641
Alignment:
Q  330 gcagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgacc 383  Q
    |||||| |||| ||||||||||   |||||||||||||||||||||||||||||    
T  9381588 gcagggccgtttctagagttttaaggatcttaggcataatatgagaaaatgacc 9381641  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 23231752 - 23231797
Alignment:
Q  338 gttcctagagtttttcagatcttaggcataatatgagaaaatgacc 383  Q
    |||||||||||||| ||| |||||| ||||||||||||||||||||    
T  23231752 gttcctagagttttacaggtcttagacataatatgagaaaatgacc 23231797  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 35824474 - 35824402
Alignment:
Q  331 cagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatacgttataa 403  Q
    |||||||||||||||||||||   | ||| ||||||||||||||||||| |||  ||| ||||||| ||||||    
T  35824474 cagggtcgttcctagagttttaggggtctaaggcataatatgagaaaataacctcttatataatacattataa 35824402  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 8113252 - 8113324
Alignment:
Q  331 cagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatacgttataa 403  Q
    ||||| |||||||||||||||   | |||||| ||||||||||||||||||||  ||||||||||||| ||||    
T  8113252 cagggccgttcctagagttttaggggtcttagacataatatgagaaaatgacccattacataatacgtcataa 8113324  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 33100183 - 33100227
Alignment:
Q  334 ggtcgttcctagagtttttcagatcttaggcataatatgagaaaa 378  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||    
T  33100183 ggtcgttcctagagttttacaggtcttaggcataatatgagaaaa 33100227  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 11830148 - 11830194
Alignment:
Q  332 agggtcgttcctagagtttttcagatcttaggcataatatgagaaaa 378  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||||    
T  11830148 agggccgttcctagagttttacagaccttaggcataatatgagaaaa 11830194  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 40145824 - 40145782
Alignment:
Q  338 gttcctagagtttttcagatcttaggcataatatgagaaaatg 380  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  40145824 gttcctagagttttacaggtcttaggcataatatgagaaaatg 40145782  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 33922125 - 33922190
Alignment:
Q  331 cagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatac 396  Q
    ||||| |||||||||| |||| ||||||||| ||||||||||||||||| | |  |||||||||||    
T  33922125 cagggccgttcctagaattttacagatcttaagcataatatgagaaaattatctcttacataatac 33922190  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 13490736 - 13490664
Alignment:
Q  330 gcagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatacgttataa 403  Q
    |||||| |||| |||||||||| |||  |||||||||||||||| |||| | ||| ||||||||||| ||||||    
T  13490736 gcagggccgtttctagagttttacaggccttaggcataatatgaaaaaagggcca-ttacataatacattataa 13490664  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 31130288 - 31130240
Alignment:
Q  332 agggtcgttcctagagtttttcagatcttaggcataatatgagaaaatg 380  Q
    |||| ||||| ||||||||| | ||||||||||||||||||||||||||    
T  31130288 agggccgttcttagagttttacggatcttaggcataatatgagaaaatg 31130240  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 11680223 - 11680288
Alignment:
Q  331 cagggtcgttcctagagtttttcagatcttaggcataatatgagaaaatgaccatttacataatac 396  Q
    |||||||||||||||||||||  |  |||||| ||||||||||| ||| ||||  |||||||||||    
T  11680223 cagggtcgttcctagagttttagaagtcttagacataatatgagtaaaagacccattacataatac 11680288  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 47396850 - 47396894
Alignment:
Q  334 ggtcgttcctagagtttttcagatcttaggcataatatgagaaaa 378  Q
    ||||||||||||||||||  || ||||||||||||||||||||||    
T  47396850 ggtcgttcctagagttttataggtcttaggcataatatgagaaaa 47396894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 9023778 - 9023738
Alignment:
Q  337 cgttcctagagtttttcagatcttaggcataatatgagaaa 377  Q
    ||||||||||||||| | || ||||||||||||||||||||    
T  9023778 cgttcctagagttttacggaccttaggcataatatgagaaa 9023738  T

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