View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_30 (Length: 440)
Name: NF1404_low_30
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 3361183 - 3361531
Alignment:
| Q |
9 |
caacaatatcatctaaagcactgaacttcatgtaattaaagccaaaccttgccatgagaatcttgccgatgatcttcaagtaaagccttcattatttcat |
108 |
Q |
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| T |
3361183 |
caacaatatcatctaaagcactgaacttcatgtaa----agccaaaccttgccatgtgaatcttgccgatgatcttcaagtaaagccttcattatttcat |
3361278 |
T |
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| Q |
109 |
gaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcagcgtcaagttggtcgat |
208 |
Q |
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| T |
3361279 |
gaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgaccgcagcgtcaagttggtcgat |
3361378 |
T |
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| Q |
209 |
tcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatcattttcgagtttctca |
308 |
Q |
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| T |
3361379 |
tcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcaatacaggccaaatcattctcaaggcacaagagatcattttcgagtttctca |
3361478 |
T |
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| Q |
309 |
atttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattc |
361 |
Q |
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| T |
3361479 |
atttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattc |
3361531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 355
Target Start/End: Original strand, 35907360 - 35907622
Alignment:
| Q |
93 |
gccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcag |
192 |
Q |
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| T |
35907360 |
gccttcactatttcatgaagtctctcagctggtccactatccaatagtagctgcacctctgcatcatcagcatgaccactcttcaaagtgttaaccgcaa |
35907459 |
T |
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| Q |
193 |
cgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatc |
292 |
Q |
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| ||||| |||| |||| ||| |||||| || | || || ||||||||||||||||||| ||||| |||||||| ||||||| |||| || ||||| |
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| T |
35907460 |
catcaagctggttgattttttctgtcaaaccattgcagcatatttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagatt |
35907559 |
T |
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| Q |
293 |
attttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacaca |
355 |
Q |
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|||| | || |||||| ||| |||||| |||||| ||| | ||||||||| |||||||| |
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| T |
35907560 |
catttccaattgctcaatctcattatctgcattggtgatcatacatctcaaaacctgaacaca |
35907622 |
T |
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