View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_31 (Length: 435)

Name: NF1404_low_31
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_31
NF1404_low_31
[»] chr4 (5 HSPs)
chr4 (91-242)||(42809532-42809683)
chr4 (38-242)||(49343231-49343452)
chr4 (25-104)||(42809441-42809520)
chr4 (299-378)||(49343542-49343622)
chr4 (317-378)||(42809923-42809984)
[»] chr1 (6 HSPs)
chr1 (92-242)||(41873202-41873351)
chr1 (104-242)||(14477220-14477367)
chr1 (266-356)||(14477392-14477483)
chr1 (32-104)||(41873380-41873452)
chr1 (317-378)||(41872911-41872971)
chr1 (38-102)||(14471467-14471531)
[»] chr7 (5 HSPs)
chr7 (104-378)||(40508865-40509145)
chr7 (38-242)||(4299336-4299557)
chr7 (299-378)||(4299166-4299246)
chr7 (104-242)||(22114431-22114575)
chr7 (105-162)||(30964526-30964584)
[»] scaffold0201 (3 HSPs)
scaffold0201 (91-242)||(21872-22026)
scaffold0201 (38-103)||(21774-21839)
scaffold0201 (344-378)||(22286-22320)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 42809532 - 42809683
Alignment:
Q  91 aacctcctctctccagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaaggaatgttacgtggaagaagaagaagaata 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42809532 aacctcctctctccagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaatgaatgttacgtggaagaagaagaagaata 42809631  T
Q  191 ttgagatgaaggaatgatgaaggttacaattctggaaattcatgcgatgttg 242  Q
    |||||||||||||||||  || ||||||||| |||||||||||| |||||||    
T  42809632 ttgagatgaaggaatgagtaatgttacaattatggaaattcatgtgatgttg 42809683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 38 - 242
Target Start/End: Original strand, 49343231 - 49343452
Alignment:
Q  38 gaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctc-------tccagatctcgttcttctcttcgtgggtt 130  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||       | ||||||||||||||||| |||||| ||    
T  49343231 gaattccacttctttctctcttaaccggtgcgccacccagtacaacaaccaccaagctcctctcttctgatttcagatctcgttcttctcctcgtggatt 49343330  T
Q  131 cttttcaaagttatggattccatggaaaa--------aggaatgttacgtggaa--gaagaagaagaatattgagatgaaggaatgatgaaggttacaat 220  Q
    |||||||||| ||||||||||||||||||        ||||||||||  | |||  ||||| ||||||||||||||||||||||||| ||| ||||||||    
T  49343331 cttttcaaagctatggattccatggaaaaaaggaatgaggaatgttagattgaaacgaagatgaagaatattgagatgaaggaatgaggaatgttacaat 49343430  T
Q  221 tctggaaattcatgcgatgttg 242  Q
    |||||||||||||| |||||||    
T  49343431 tctggaaattcatgtgatgttg 49343452  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 42809441 - 42809520
Alignment:
Q  25 attgggaattttcgaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctcc 104  Q
    |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  42809441 attgggcatttgcgaattccacttctatctctctcaaccggtgcgccacccagtacaacaaccaccaacctcctctctcc 42809520  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 49343542 - 49343622
Alignment:
Q  299 ttcatggataaag-aattcgtgttttgatttttgatgttgcacttctggaaatttgtttctggaaatcatgtgatgttgtt 378  Q
    ||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||    
T  49343542 ttcatggataaaggaattcatgttttgatttttgatgttgcatttttggaaatttgtttatggaaatcatgtgatgttgtt 49343622  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 42809923 - 42809984
Alignment:
Q  317 gtgttttgatttttgatgttgcacttctggaaatttgtttctggaaatcatgtgatgttgtt 378  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  42809923 gtgttttgatttttgatgttgcagttctggaaatttgtttctgaaaatcatgtgatgttgtt 42809984  T

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Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 92 - 242
Target Start/End: Complemental strand, 41873351 - 41873202
Alignment:
Q  92 acctcctctctccagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaaggaatgttacgtggaagaagaagaagaatat 191  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41873351 acctcctctctccagatctcgttcttctcttcgtgg-ttcttttcaaagttatggattccatggaaaaaggaatgttacggggaagaagaagaagaatat 41873253  T
Q  192 tgagatgaaggaatgatgaaggttacaattctggaaattcatgcgatgttg 242  Q
    ||||||||||||||||  || ||||||||| |||||||||||| |||||||    
T  41873252 tgagatgaaggaatgagtaatgttacaattatggaaattcatgtgatgttg 41873202  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 104 - 242
Target Start/End: Original strand, 14477220 - 14477367
Alignment:
Q  104 cagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaa-------aggaatgttacgtggaa--gaagaagaagaatattga 194  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||||  | |||  ||||| ||||||||||||    
T  14477220 cagatctcgttcttctcttcgtgggttcttttcaaagctatggattccatggaaaaaggaatgaggaatgttagattgaaacgaagatgaagaatattga 14477319  T
Q  195 gatgaaggaatgatgaaggttacaattctggaaattcatgcgatgttg 242  Q
    ||||||||||||| ||| ||||||||| |||||||||||| |||||||    
T  14477320 gatgaaggaatgaggaatgttacaattttggaaattcatgtgatgttg 14477367  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 266 - 356
Target Start/End: Original strand, 14477392 - 14477483
Alignment:
Q  266 ctagaaattcatatgatgttacaattatggaaattcatggataaag-aattcgtgttttgatttttgatgttgcacttctggaaatttgttt 356  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  14477392 ctagaaattcatgtgattttacaattctggaaattcatggataaaggaattcgtgttttgatttttgatgttgcacttctgtaaatttgttt 14477483  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 41873452 - 41873380
Alignment:
Q  32 attttcgaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctcc 104  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  41873452 atttgcgaattccacttctatctctcttaaccggtgcgccatccagtacaacaaccaccaacctcctctctcc 41873380  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 41872971 - 41872911
Alignment:
Q  317 gtgttttgatttttgatgttgcacttctggaaatttgtttctggaaatcatgtgatgttgtt 378  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  41872971 gtgttttgatttttgatgttccacttttggaaatttgtttct-gaaatcatgtgatgttgtt 41872911  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 14471467 - 14471531
Alignment:
Q  38 gaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctct 102  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||| |||| ||||||||||||||||    
T  14471467 gaattccacttctttctctcttaaccggtgcaccacctagtaccacaaccaccaacctcctctct 14471531  T

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Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 104 - 378
Target Start/End: Complemental strand, 40509145 - 40508865
Alignment:
Q  104 cagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaaggaatgttacg----tggaa--gaagaagaagaatattgagat 197  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||  ||  | | |    | |||  ||||| |||||||||||||||    
T  40509145 cagatctcgctcttctcttcgtgggttcttttcaaagctatggattcaatggaaaaaacaaaatgaggaatatagaaacgaagatgaagaatattgagat 40509046  T
Q  198 gaaggaatgatgaaggttacaattctggaaattcatgcgatgttgnnnnnnnnnnnnnnnnnnnnnnnctagaaattcatatgatgttacaattatggaa 297  Q
    |||||||||| ||| ||| |||||||||||||||||| |||||||                       |||||||||||| ||||||||||||| |||||    
T  40509045 gaaggaatgaggaatgttgcaattctggaaattcatgtgatgttgattttttattttgattttgatttctagaaattcatgtgatgttacaattctggaa 40508946  T
Q  298 attcatggataaagaattcgtgttttgatttttgatgttgcacttctggaaatttgtttctggaaatcatgtgatgttgtt 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40508945 attcatggataaagaattcgtgttttgatttttgatgttgcacttctggaaatttgtttctggaaatcatgtgatgttgtt 40508865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 38 - 242
Target Start/End: Complemental strand, 4299557 - 4299336
Alignment:
Q  38 gaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctcc-------agatctcgttcttctcttcgtgggtt 130  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||||| |       |||||||||| |||||||||||||||    
T  4299557 gaattccacttctttctcttttaaccggtgcgccacccagtaccacaaccaccaacctcctctcttccaatttcagatctcgtttttctcttcgtgggtt 4299458  T
Q  131 cttttcaaagttatggattccatggaaaaa--------ggaatgttacgtggaa--gaagaagaagaatattgagatgaaggaatgatgaaggttacaat 220  Q
    |||||||||| |||||||||||||||||||        |||||||||  | |||  ||||| ||||||||||||||||||||||||| ||| ||||||||    
T  4299457 cttttcaaagctatggattccatggaaaaaaggaatgaggaatgttagattgaaacgaagatgaagaatattgagatgaaggaatgaggaatgttacaat 4299358  T
Q  221 tctggaaattcatgcgatgttg 242  Q
    |||||||||||||| |||||||    
T  4299357 tctggaaattcatgtgatgttg 4299336  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 4299246 - 4299166
Alignment:
Q  299 ttcatggataaag-aattcgtgttttgatttttgatgttgcacttctggaaatttgtttctggaaatcatgtgatgttgtt 378  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  4299246 ttcatggataaaggaattcgtgttttgatttttgatgttgcacttttggaaatttgtttatggaaatcatgtgatgttgtt 4299166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 22114575 - 22114431
Alignment:
Q  104 cagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaaggaatgttacg----tggaa--gaagaagaagaatattgagat 197  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||  ||  | | |    | |||  ||||| |||||||||||||||    
T  22114575 cagatctcgctcttctcttcgtgggttcttttcaaagctatggattcaatggaaaaaacaaaatgaggaatatagaaacgaagatgaagaatattgagat 22114476  T
Q  198 gaaggaatgatgaaggttacaattctggaaattcatgcgatgttg 242  Q
    |||||||||| ||| ||| |||||||||||||||||| |||||||    
T  22114475 gaaggaatgaggaatgttgcaattctggaaattcatgtgatgttg 22114431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 30964584 - 30964526
Alignment:
Q  105 agatctcgttcttct-cttcgtgggttcttttcaaagttatggattccatggaaaaagg 162  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  30964584 agatctcgttcttcttcttcgtgggttcttttcaaagctatggattccatggaaaaagg 30964526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 21872 - 22026
Alignment:
Q  91 aacctcctctctccagatctcgttcttctcttcgtgggttcttttcaaagttatggattccatggaaaaaggaatgttacgtg---gaagaagaagaaga 187  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  21872 aacctcctctctctagatctcgttcttctcttcgtgggttctttttaaagttatggattccatggaaaaaggaatgttacgtggaagaagaagaagaaga 21971  T
Q  188 atattgagatgaaggaatgatgaaggttacaattctggaaattcatgcgatgttg 242  Q
    ||||||||||||||||||||  || ||||||||| |||||||||||| |||||||    
T  21972 atattgagatgaaggaatgagtaatgttacaattatggaaattcatgtgatgttg 22026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 21774 - 21839
Alignment:
Q  38 gaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21774 gaattccacttctatctctcttaaccggtgcgccacccagtacaacaaccaccaacctcctctctc 21839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 22286 - 22320
Alignment:
Q  344 tggaaatttgtttctggaaatcatgtgatgttgtt 378  Q
    |||||||||||||||| ||||||||||||||||||    
T  22286 tggaaatttgtttctgaaaatcatgtgatgttgtt 22320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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