View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_36 (Length: 421)

Name: NF1404_low_36
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_36
NF1404_low_36
[»] chr4 (3 HSPs)
chr4 (16-302)||(53786763-53787049)
chr4 (127-302)||(19189541-19189715)
chr4 (199-301)||(37853526-37853627)
[»] chr2 (4 HSPs)
chr2 (164-303)||(35717025-35717159)
chr2 (193-302)||(797652-797760)
chr2 (64-146)||(35716910-35716992)
chr2 (81-115)||(18067283-18067317)
[»] chr8 (2 HSPs)
chr8 (127-280)||(16623167-16623319)
chr8 (81-145)||(16623082-16623146)
[»] chr6 (4 HSPs)
chr6 (64-145)||(17340162-17340243)
chr6 (186-302)||(16190151-16190258)
chr6 (203-264)||(17990351-17990411)
chr6 (81-145)||(16190012-16190076)
[»] chr3 (1 HSPs)
chr3 (81-115)||(44864641-44864675)
[»] chr1 (1 HSPs)
chr1 (63-115)||(33689682-33689734)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 53787049 - 53786763
Alignment:
Q  16 atatacaaagttaacatacattccgatatggtacataaatacttgtcgtttcccatcaaaaaagattctaaatgtaatcaaaacgacatcccatcaaaat 115  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53787049 atatacaaagttaacatagattccaatatggtacctaaatacttgtcatttcccatcaaaaaagattctaaatgtaatcaaaacgacatcccatcaaaat 53786950  T
Q  116 tgcaaaataaggttctaaaagtaatcaaaaccatgctttcctatttgtgtctgcctcatcttcacttctattctaagctccaccacatcaatattatctt 215  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  53786949 tccaaaataaggttctaaaagtaatcaaaaccatgctttcctatctgtgtctgcctcatcttcacttctattctaagttccaccaaatcaatattatctt 53786850  T
Q  216 gtttatcacttgattcataactcttgttcttccgcatccaactcctcattttcattaggcacaactttagcgagtctggattgctat 302  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  53786849 gtttatcacttgattcataactcttgttcttccacatccaactcctcatttccattaggcacaactttagcgagtctagattgctat 53786763  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 302
Target Start/End: Complemental strand, 19189715 - 19189541
Alignment:
Q  127 gttctaaaagtaatcaaaaccatgctttcctatttgtgtctgcctcatcttcacttctattctaagctccacc----acatcaatattatcttgtttatc 222  Q
    ||||||||||||||||||| ||||||| |  || || | ||||||||||||||     |||||||| ||||||    ||||||||||||||||||| |||    
T  19189715 gttctaaaagtaatcaaaatcatgcttccgcatctgcggctgcctcatcttca-----attctaagttccaccacatacatcaatattatcttgttcatc 19189621  T
Q  223 actt-gattcataactcttgttcttccgcatccaactcctcattttcattaggcacaactttagcgagtctggattgctat 302  Q
    |||| |||||| ||||  |||||||||   ||||||||||||| | |||| |||||| || ||| || ||| |||||||||    
T  19189620 acttggattca-aacttctgttcttccatctccaactcctcatctccatttggcacagctgtagtgactctagattgctat 19189541  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 37853526 - 37853627
Alignment:
Q  199 cacatcaatattatcttgtttatcacttgattcataactcttgttcttccgcatccaactcctcattttcattaggcacaactttagcgagtctggattg 298  Q
    ||||||||||||||  |||| ||| ||||||||| ||||||||| ||||| | ||||||||||||| | || ||| |||| || |||| ||||| |||||    
T  37853526 cacatcaatattatactgttcatcccttgattca-aactcttgtgcttccacctccaactcctcatctacactagacacagctgtagctagtctagattg 37853624  T
Q  299 cta 301  Q
    |||    
T  37853625 cta 37853627  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 303
Target Start/End: Original strand, 35717025 - 35717159
Alignment:
Q  164 gtctgcctcatcttcacttctattctaagctccaccacatcaatattatcttgtttatcacttgattcataactcttgttcttccgcatccaactcctca 263  Q
    ||||||||||||||||||||||     || ||||||||||||||||||||||||| ||||||||||||| ||   |||||||||| | |||||||| |||    
T  35717025 gtctgcctcatcttcacttcta-----agttccaccacatcaatattatcttgttcatcacttgattcaaaatctttgttcttccacctccaactcatca 35717119  T
Q  264 ttttcattaggcacaactttagcgagtctggattgctatt 303  Q
    | | ||||||||| | || ||| |||||| || |||||||    
T  35717120 tctccattaggcatagctgtagtgagtctagactgctatt 35717159  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 302
Target Start/End: Original strand, 797652 - 797760
Alignment:
Q  193 ctccaccacatcaatattatcttgtttatcacttgattcataactcttgttcttccgcatccaactcctcattttcattaggcacaactttagcgagtct 292  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||| | ||||||||||||| | | |||| || |||| ||| ||||||    
T  797652 ctccaccacatcaatatcatcttgttcatcacttgattca-aactattgttcttccacctccaactcctcatctcctttagtcataactgtagtgagtct 797750  T
Q  293 ggattgctat 302  Q
     |||||||||    
T  797751 agattgctat 797760  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 35716910 - 35716992
Alignment:
Q  64 tttcccatcaaaaaagattctaaatgtaatcaaaacgacatcccatcaaaattgcaaaataaggttctaaaagtaatcaaaac 146  Q
    ||||||||||||| |  || ||||||||||||||| |||||||  |||||||  |||||| | ||||||||||||| ||||||    
T  35716910 tttcccatcaaaataagttgtaaatgtaatcaaaatgacatcctgtcaaaatgacaaaatcaagttctaaaagtaaacaaaac 35716992  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 18067317 - 18067283
Alignment:
Q  81 ttctaaatgtaatcaaaacgacatcccatcaaaat 115  Q
    |||||||||||||||||| ||||||||||||||||    
T  18067317 ttctaaatgtaatcaaaatgacatcccatcaaaat 18067283  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 280
Target Start/End: Original strand, 16623167 - 16623319
Alignment:
Q  127 gttctaaaagtaatcaaaaccatgctttcctatttgtgtctgcctcatcttcacttctattctaagctccaccacatcaatattatcttgtttatcactt 226  Q
    ||||||||| ||||||||| |||||||    || || |||| |||||||||||||||||     |  ||||||||||||||||||||||||||||| |||    
T  16623167 gttctaaaactaatcaaaatcatgcttctgcatctgcgtcttcctcatcttcacttcta-----aattccaccacatcaatattatcttgtttatcgctt 16623261  T
Q  227 gattca----taactcttgttcttccgcatccaactcctcattttcattaggcacaac 280  Q
    ||||||     ||||||||||||||| | ||||||||||||  | |||||| ||||||    
T  16623262 gattcaattcaaactcttgttcttccacctccaactcctcaactccattagccacaac 16623319  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 16623082 - 16623146
Alignment:
Q  81 ttctaaatgtaatcaaaacgacatcccatcaaaattgcaaaataaggttctaaaagtaatcaaaa 145  Q
    |||||||||||||||||| ||||||||  |||||   |||||| | ||||||||||||| |||||    
T  16623082 ttctaaatgtaatcaaaatgacatccctccaaaacaacaaaatcaagttctaaaagtaaacaaaa 16623146  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 17340243 - 17340162
Alignment:
Q  64 tttcccatcaaaaaagattctaaatgtaatcaaaacgacatcccatcaaaattgcaaaataaggttctaaaagtaatcaaaa 145  Q
    ||||||||||||| |  |||||||||||||||||| ||||||| | ||||||  |||||||| | |||||||||||||||||    
T  17340243 tttcccatcaaaataagttctaaatgtaatcaaaaggacatcctagcaaaatgacaaaataaagatctaaaagtaatcaaaa 17340162  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 16190151 - 16190258
Alignment:
Q  186 ttctaagctccaccacatcaatattatcttgtttatcacttgattcataactcttgttcttccgcatccaactcctcattttcattaggcacaactttag 285  Q
    ||||||| | ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||  | ||||||||        ||||||||| ||||||||    
T  16190151 ttctaagtttcaccacatcaatattatcttgttcatcccttgattca-aactcttgttcttcaacctccaactc--------cattaggcaaaactttag 16190241  T
Q  286 cgagtctggattgctat 302  Q
     |||||| |||||||||    
T  16190242 tgagtctagattgctat 16190258  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 17990411 - 17990351
Alignment:
Q  203 tcaatattatcttgtttatcacttgattcataactcttgttcttccgcatccaactcctcat 264  Q
    |||| ||||||||||| ||||||||||||| |||| |||||||||| | |||||||||||||    
T  17990411 tcaaaattatcttgttcatcacttgattca-aactattgttcttccacttccaactcctcat 17990351  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 16190012 - 16190076
Alignment:
Q  81 ttctaaatgtaatcaaaacgacatcccatcaaaattgcaaaataaggttctaaaagtaatcaaaa 145  Q
    ||||||||||||||| || |||||| |||||||||  |||||| | ||||||||||||| |||||    
T  16190012 ttctaaatgtaatcataatgacatctcatcaaaatgacaaaatcaagttctaaaagtaaacaaaa 16190076  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 44864641 - 44864675
Alignment:
Q  81 ttctaaatgtaatcaaaacgacatcccatcaaaat 115  Q
    |||||||||||||||||| ||||||||||||||||    
T  44864641 ttctaaatgtaatcaaaatgacatcccatcaaaat 44864675  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 33689682 - 33689734
Alignment:
Q  63 gtttcccatcaaaaaagattctaaatgtaatcaaaacgacatcccatcaaaat 115  Q
    |||||||||||||| | | | ||||| ||||||||| ||||||||||||||||    
T  33689682 gtttcccatcaaaataaactttaaatttaatcaaaatgacatcccatcaaaat 33689734  T

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