View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_38 (Length: 418)
Name: NF1404_low_38
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 404
Target Start/End: Original strand, 29472889 - 29473263
Alignment:
| Q |
30 |
ttaaatgccaatccgtaactttgttaaatttatcgtaattctaaacatgcacgtatagtcagtcatagtctacatgaaaacgattgttgcttatacaatg |
129 |
Q |
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| T |
29472889 |
ttaaatgccaatccgtaactttgttaaatttatcgtaattctaaacatgcacgtatagtcagtcatagtctacatgaaaacgattgttgcttattcaatg |
29472988 |
T |
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| Q |
130 |
tataatgttgtgttatgcattaaggttttttcttggtggatagggtgtggggggtagtaggaggtgcatttatacaaacttattactataatcctctcnn |
229 |
Q |
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| T |
29472989 |
tataatgttgtgttatgcattaaggttttttcttggtggatagggtgtgggggttagtaggaggtgcatttatacaaacttattactataatcctctcaa |
29473088 |
T |
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| Q |
230 |
nnnnncaacatatgccaataacatttatacaagatagagatagtgtttcnnnnnnnntaaagatagagataaatttgtagaagcatgacacaatgaagcc |
329 |
Q |
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| T |
29473089 |
aaaaacaacatatgccaataacatttatacaagatagagatagtgtttcaaaaaaaataaagatagagataaatttgtagaagcatgacacaatgaagcc |
29473188 |
T |
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| Q |
330 |
aaacttattttgacaaacataatcatcaaacatgaacatgtaatggagttttcatctaccatttctcatggcctt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29473189 |
aaacttattttgacaaacataatcatcaaacatgaacatgtaatggagttttcatctaccatttctcatggcctt |
29473263 |
T |
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