View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1404_low_4 (Length: 717)
Name: NF1404_low_4
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 101 - 462
Target Start/End: Original strand, 14334175 - 14334537
Alignment:
| Q |
101 |
gtttgggatggaaaagttgattgaagttgcagctgatttagtgaatgatagactcccagaggcaagagatgcagcaagaagtattgcaacttcagtgtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14334175 |
gtttgggatggaaaagttgattgaagttgcagctgatttagtgaatgatagactcccagaggcaagagatgcagcaagaagtattgcaacttcagtgtac |
14334274 |
T |
|
| Q |
201 |
gaggcaatcattaaggatgtggaagaggaacagaagatggaggtgtggcagagtttctgccactctaagctaacagcaattagtgctctttcaattttga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
14334275 |
gaggcaatcattaaggatgtggaagaggaacagaagatggaggtgtggcagagtttctgccactctaagctaacactaattaatgctctttcaattttga |
14334374 |
T |
|
| Q |
301 |
agatagttaaactttagaactggcaaagtatttattttgtgtacgtttgctcatacttgaggcatatttagaagtttag-ctttatttgtggcagtgctc |
399 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14334375 |
agatagttaaactttagaattggcaaagtatttattttgtgtacgtttgctcatacttgaggcatatttagaagtttagcctttatttgtggcagtgctc |
14334474 |
T |
|
| Q |
400 |
atggttctgcatgagcagccattggcaaataagatttcattttgtttgatgtagctacattgc |
462 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14334475 |
atggttctacatgagcagccattggcaaataagatttcattttgtttgatgtagctacattgc |
14334537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 526 - 708
Target Start/End: Original strand, 14334601 - 14334777
Alignment:
| Q |
526 |
gattaagaggtgggaggttagagaaaactgtcaatctcatcaagaatttagaatgaaatttacgtgtaagtgtaacttatcataatttatcaattacaaa |
625 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14334601 |
gattaagaggtgggaagttagagaaaaatgtcaatctcatcaagaatttccaatgaaattta------agtgtaacttatcataatttatcaattacaaa |
14334694 |
T |
|
| Q |
626 |
ataaaagattagaactcaagtcagagttggtgtaaggtgagggtctaaccatttgtgtctaccataattggtttaatctgtgg |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14334695 |
ataaaagattagaactcaagtcagagttggtgtaaggtgagggtctaaccatttgtgtctatcataattggtttaatctgtgg |
14334777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 2487717 - 2487816
Alignment:
| Q |
7 |
aactctggtagaattaagagcacaatcaaaacgatttttagcccctctacaaaattttgtaccataaagcttgttggccttgtctcctacaccggtttgg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
2487717 |
aactctggtagaattaagagcacaatcaaaacaatttttagcccctctacaaaattttgtaccataaagcttgtcggccttgtctcctacatcggtttgg |
2487816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University