View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_45 (Length: 410)
Name: NF1404_low_45
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 126 - 397
Target Start/End: Complemental strand, 19398699 - 19398428
Alignment:
| Q |
126 |
aagactttgaataatataatttctttgaacctcaagttttaaacttggtaccaaattattcaaaacttatcatattacgattacgattggtaaatgttta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19398699 |
aagactttgaataatataatttctttgaacctcaagttttaaacttggtaccaaattattcaaaacttatcatattacgattacgattggtaaatgttta |
19398600 |
T |
|
| Q |
226 |
attgatactattttgtggacaacaattatgttgatcaccctgtcatcatttgaacctttttgatatgacagaggaaattgctatgaataccacacagatt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19398599 |
attgatactattttgtggacaacaattatgttgatcaccctgtcatcatttgaacctttttgatatgacagaggaaattgctatgaataccacacagatt |
19398500 |
T |
|
| Q |
326 |
tggcaaaattaaaattaacaaagtaatacaaattgaaatttgttttgttgttaaccctcttatttataagaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19398499 |
tggcaaaattaaaattaacaaagtaatacaaattgaaatttgttttgttgttaaccctcttatttataagaa |
19398428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 126 - 338
Target Start/End: Complemental strand, 18102417 - 18102211
Alignment:
| Q |
126 |
aagactttgaataatataatttctttgaacctcaagttttaaacttggtaccaaattattcaaaacttatcatattacgattacgattggtaaatgttta |
225 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
18102417 |
aagacttggaataatataatttctttgaacctcatgttttaaacttggtgccaaattattcaaaacttatcatattacgatt------ggaaaatgttta |
18102324 |
T |
|
| Q |
226 |
attgatactattttgtggacaacaattatgttgatcaccctgtcatcatttgaacctttttgatatgacagaggaaattgctatgaataccacacagatt |
325 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
18102323 |
attgatactattttgtggacaacaattatgtggatcaccctgtcatcatttcaacctttttgatatgacaaaggaaattgctatgaataccgcacagatt |
18102224 |
T |
|
| Q |
326 |
tggcaaaattaaa |
338 |
Q |
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||||||||||||| |
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| T |
18102223 |
tggcaaaattaaa |
18102211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 136 - 338
Target Start/End: Complemental strand, 19374664 - 19374462
Alignment:
| Q |
136 |
ataatataatttctttgaacctcaagttttaaacttggtaccaaattattcaaaacttatcatattacgattacgattggtaaatgtttaattgatacta |
235 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19374664 |
ataatataatttctttgaacctcatgtttaaaacttggtaccaaattattcaaaacttatcatattacgattacgattggtaaatgtttaattgatacta |
19374565 |
T |
|
| Q |
236 |
ttttgtggacaacaattatgttgatcaccctgtcatcatttgaacctttttgatatgacagaggaaattgctatgaataccacacagatttggcaaaatt |
335 |
Q |
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||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| || | ||||||||||| | |
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| T |
19374564 |
ttttgcggataacaattatgtggatcaccctgccatcatttgaacctttttgatatgagaaaggaaattgctatgaataccgcatatatttggcaaaact |
19374465 |
T |
|
| Q |
336 |
aaa |
338 |
Q |
| |
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||| |
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|
| T |
19374464 |
aaa |
19374462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 19332960 - 19332885
Alignment:
| Q |
265 |
ctgtcatcatttgaacct-ttttgata-tgacagaggaaattgctatgaataccacacagatttggcaaaattaaa |
338 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19332960 |
ctgtcatcatttgaacctgttttgataatgacaaaggaaattgctatgaataccgcacagatttggcaaaattaaa |
19332885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 19374445 - 19374385
Alignment:
| Q |
335 |
taaaattaacaaagtaatacaaattgaaatttgttttgttgttaaccctcttatttataag |
395 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
19374445 |
taaaattaacaaagtaatacaaatttaaatttgttttgtagttaaccctctgatttataag |
19374385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 19398797 - 19398745
Alignment:
| Q |
45 |
agaaagtatgtggacaacagtgtcaattgatacaaatggggtctgattgttag |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19398797 |
agaaagtatgtggacaacagtttcaattgatacaaatggggtctgattgttag |
19398745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 19374747 - 19374695
Alignment:
| Q |
45 |
agaaagtatgtggacaacagtgtcaattgatacaaatggggtctgattgttag |
97 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||||||||||||| |
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| T |
19374747 |
agaaagtatgtggacaacaatttcgattgatacaaatggggtctgattgttag |
19374695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 19337357 - 19337317
Alignment:
| Q |
298 |
ggaaattgctatgaataccacacagatttggcaaaattaaa |
338 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19337357 |
ggaaattgctatgaataccgcacagatttggcaaaattaaa |
19337317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 19332869 - 19332810
Alignment:
| Q |
334 |
ttaaaattaacaaagtaatacaaattgaaatttgttttgttgttaaccctcttatttata |
393 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| || |||||||||||||| ||||||| |
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|
| T |
19332869 |
ttaaaattaacaaagtaatacaaattaaattttattatgttgttaaccctcagatttata |
19332810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 17949363 - 17949303
Alignment:
| Q |
126 |
aagactttgaataatataatttctttgaa-cctcaagttttaaacttggtaccaaattatt |
185 |
Q |
| |
|
||||||| |||| ||| |||||||||||| ||||| |||||||||||||| |||||||||| |
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|
| T |
17949363 |
aagacttagaattataaaatttctttgaaacctcatgttttaaacttggtgccaaattatt |
17949303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 19413121 - 19413062
Alignment:
| Q |
126 |
aagactttgaataatataatttctttgaacctcaagttttaaacttggtaccaaattatt |
185 |
Q |
| |
|
||||||| |||| ||| |||||||||||| |||| |||||||| ||||| |||||||||| |
|
|
| T |
19413121 |
aagacttggaattatagaatttctttgaagctcatgttttaaaattggttccaaattatt |
19413062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 19379759 - 19379718
Alignment:
| Q |
273 |
atttgaacctttttgatatgacagaggaaattgctatgaata |
314 |
Q |
| |
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|||||||||| |||||||||||| ||| |||||||||||||| |
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|
| T |
19379759 |
atttgaacctctttgatatgacaaaggtaattgctatgaata |
19379718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 19423509 - 19423468
Alignment:
| Q |
144 |
atttctttgaacctcaagttttaaacttggtaccaaattatt |
185 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||||||||| |
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|
| T |
19423509 |
atttctttgaacctcatgttttaaaattggttccaaattatt |
19423468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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