View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_48 (Length: 407)
Name: NF1404_low_48
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 201 - 390
Target Start/End: Original strand, 11402787 - 11402976
Alignment:
| Q |
201 |
gagaattttatttacctacaatagtattttttaactacatcattcgtctaaatttannnnnnnnngtggaattttcaagtctttgtcatgaccgcaaa-t |
299 |
Q |
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| T |
11402787 |
gagaattttatttacctacaatagaattttttaactacatcattcgtataaatttatttttttt-gtggaattttcaagtctttgtcatgaccgcaaaat |
11402885 |
T |
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| Q |
300 |
ggtctcaaatgatttttccaaatcatgacctctttatctccttttttgaggaaatgacctcttatctcatactcatatggtgtgttctctg |
390 |
Q |
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| T |
11402886 |
ggtctcaaatgatttttccaaatcatgacctctttatctccttttttgaggaaatgacctcttatctcatactcatatggtgtgttctctg |
11402976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 11402688 - 11402735
Alignment:
| Q |
102 |
tgatataagttttagtgagtccttgaatggaatacaaagtttttttac |
149 |
Q |
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| T |
11402688 |
tgatataagttttagtgagtccttgaatgggatacaaagtttttttac |
11402735 |
T |
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