View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_49 (Length: 406)

Name: NF1404_low_49
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_49
NF1404_low_49
[»] chr2 (1 HSPs)
chr2 (30-395)||(19495818-19496183)
[»] scaffold0363 (2 HSPs)
scaffold0363 (105-309)||(15398-15608)
scaffold0363 (350-395)||(15306-15351)
[»] chr8 (20 HSPs)
chr8 (105-309)||(14403245-14403455)
chr8 (113-318)||(13164380-13164591)
chr8 (105-308)||(6313629-6313838)
chr8 (231-395)||(5547654-5547818)
chr8 (105-324)||(5568675-5568900)
chr8 (105-304)||(5624537-5624742)
chr8 (177-295)||(12190381-12190502)
chr8 (177-295)||(12434809-12434930)
chr8 (105-206)||(5562348-5562449)
chr8 (350-395)||(5568929-5568974)
chr8 (350-395)||(14403502-14403547)
chr8 (351-395)||(5562612-5562656)
chr8 (259-318)||(5572942-5573001)
chr8 (105-212)||(5598440-5598547)
chr8 (105-212)||(5636728-5636835)
chr8 (231-318)||(32632788-32632875)
chr8 (177-295)||(12178686-12178807)
chr8 (177-295)||(12423114-12423235)
chr8 (350-395)||(6313536-6313581)
chr8 (242-318)||(5562479-5562555)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 30 - 395
Target Start/End: Complemental strand, 19496183 - 19495818
Alignment:
Q  30 gaatctgctttgtatcgaaactatttctggacctacacagactaccgcatcaaaagtggaaaaaatatttgggacgaacttgtgaaagcaatgaatgaat 129  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  19496183 gaatctgctttgtgtcgaaactatttcttgacctacacagactaccgcatcaaaagtggaaaaaaaatctgggacgaacttgtgaaagcaatgaatgaat 19496084  T
Q  130 caactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataatgaagtgtagaagaaaaagtggaca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19496083 caactctttttctagtggtgttctcagagaactacgcggattccagttggtgtttggatgaacttgttgaaataatgaagtgtagaagaaaaagtagaca 19495984  T
Q  230 ggttgttgttcttcctgtgttctaccgtattgatccttcacaggttcggaagcagactgggagttatggcactgcgttggcaagacacaggcaaggccac 329  Q
     |||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19495983 agttgttgttcttcctgtgttctaccgtattgaaccttcatatgttcggaagcagactgggagttatggcgctgcgttggcaagacacagccaaggccac 19495884  T
Q  330 cgtgacagtcatatacaactttggaagaatgctctttctgaagctgctaatttatctggttttcat 395  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||| |||||||||||||||||||    
T  19495883 cgtgacagtcatatacaactttggaaggatgctcttcgtgaagctggtaatttatctggttttcat 19495818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 105 - 309
Target Start/End: Complemental strand, 15608 - 15398
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    |||||||| |||||||| ||  |||| ||||||||||| || |||||||| ||||||||||||  ||| |  ||||||||| | ||||| ||||||||||    
T  15608 gaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataa 15509  T
Q  205 tgaagtgtagaagaaaaagtg-----gacag-gttgttgttcttcctgtgttctaccgtattgatccttcacaggttcggaagcagactgggagttatgg 298  Q
    || ||||||| |  |||| ||     ||||  ||||||||| ||||||||||||||| | |||| |||||||| || |||||||||||||||||||| ||    
T  15508 tggagtgtagtaacaaaaatgaagatgacaacgttgttgttgttcctgtgttctaccatgttgacccttcacacgtgcggaagcagactgggagttacgg 15409  T
Q  299 cactgcgttgg 309  Q
    |||||||||||    
T  15408 cactgcgttgg 15398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 15351 - 15306
Alignment:
Q  350 ttggaagaatgctctttctgaagctgctaatttatctggttttcat 395  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||||    
T  15351 ttggaagaatgctctttttcaagctgctaatttgtctggttttcat 15306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 105 - 309
Target Start/End: Original strand, 14403245 - 14403455
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    |||||||| |||||||| ||  |||| ||||||||||| || |||||||| ||||||||||||  ||| |  ||||||||| | ||||| ||||||||||    
T  14403245 gaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataa 14403344  T
Q  205 tgaagtgtagaagaaaaagtg-----gacag-gttgttgttcttcctgtgttctaccgtattgatccttcacaggttcggaagcagactgggagttatgg 298  Q
    || ||||||| |  |||| ||     ||||  ||||||||| ||||||||||||||| | |||| |||||||| || |||||||||||||||||||| ||    
T  14403345 tggagtgtagtaacaaaaatgaagatgacaacgttgttgttgttcctgtgttctaccatgttgacccttcacacgtgcggaagcagactgggagttacgg 14403444  T
Q  299 cactgcgttgg 309  Q
    |||||||||||    
T  14403445 cactgcgttgg 14403455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 113 - 318
Target Start/End: Original strand, 13164380 - 13164591
Alignment:
Q  113 gaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataatgaagtgt 212  Q
    ||||||||| |||||||| ||||||||||| || ||||||||||||||||||||   ||| |  ||||||||| | ||||| ||| |||||||| |||||    
T  13164380 gaaagcaatcaatgaatccactctttttcttgtcgtgttctcagagaactacgcattttcaacatggtgtttgaacgaactagttcaaataatggagtgt 13164479  T
Q  213 ag----aagaa--aaagtggacaggttgttgttcttcctgtgttctaccgtattgatccttcacaggttcggaagcagactgggagttatggcactgcgt 306  Q
    ||    || ||  ||| ||   | ||||||||| ||||||||||||||| | |||| |||||||| ||||||||||||||||| ||||| |||||||| |    
T  13164480 agcaacaacaatgaaaatgataacgttgttgttattcctgtgttctaccatgttgacccttcacatgttcggaagcagactggcagttacggcactgctt 13164579  T
Q  307 tggcaagacaca 318  Q
    |||||| |||||    
T  13164580 tggcaaaacaca 13164591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 308
Target Start/End: Complemental strand, 6313838 - 6313629
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    ||||| ||||||||||| ||  |||| ||| | ||||| ||||||||||| || ||||| ||   ||| |  ||||||||| | ||||||||||||||||    
T  6313838 gaactagtgaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaacgaacttgttgaaataa 6313739  T
Q  205 tgaagtgtagaagaaaaagtg-----gaca-ggttgttgttcttcctgtgttctaccgtattgatccttcacaggttcggaagcagactgggagttatgg 298  Q
    || ||||| | |  |||| ||     |||| |||||||||| |||| |||||||||| | |||| |||||||| || |||||||||||||| ||||||||    
T  6313738 tggagtgttgtaacaaaaatgaagatgacaaggttgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatgg 6313639  T
Q  299 cactgcgttg 308  Q
    ||||||||||    
T  6313638 cactgcgttg 6313629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 395
Target Start/End: Original strand, 5547654 - 5547818
Alignment:
Q  231 gttgttgttcttcctgtgttctaccgtattgatccttcacaggttcggaagcagactgggagttatggcactgcgttggcaagacacagg---caaggcc 327  Q
    ||||||||| ||||||||||||||| | |||| |||||||| ||  ||||||| |||||||||||||||||||| ||||| | ||||| |   ||||||     
T  5547654 gttgttgttattcctgtgttctaccatgttgacccttcacacgtgaggaagcaaactgggagttatggcactgccttggctaaacacaagaagcaaggca 5547753  T
Q  328 accgtgacagtcatatacaactttggaagaatgctctttctgaagctgctaatttatctggttttcat 395  Q
    ||   |||  | | || |||   ||||| | |||||||||||||||||||||||| ||||||||||||    
T  5547754 ac---gaccatgagatgcaaaaatggaatactgctctttctgaagctgctaatttgtctggttttcat 5547818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 324
Target Start/End: Original strand, 5568675 - 5568900
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    ||||||| ||||||||| ||  |||||||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| |||||||||||||| |||    
T  5568675 gaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacatggtgtttgaatgaacttgttgaactaa 5568774  T
Q  205 tgaagtgtagaagaaaaagtggacagg------ttgttgttcttcctgtgttctaccgtattgatccttcacaggttcggaagcagactgggagttatgg 298  Q
    || ||||  | |  |||| || | | |      ||| |||  ||||||||||||||| | |||| |||||||| || ||||||||||| |||||||||||    
T  5568775 tggagtgccgtaacaaaaatgaagacgacaacattggtgtgattcctgtgttctaccatgttgacccttcacatgtgcggaagcagaccgggagttatgg 5568874  T
Q  299 cactgcgttggcaagacacaggcaag 324  Q
    || ||| ||||| | ||||| |||||    
T  5568875 cagtgcattggcgaaacacaagcaag 5568900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 304
Target Start/End: Original strand, 5624537 - 5624742
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    ||||||||||||||||| ||  |||| ||||| | ||| ||||||||||| ||||||||||||   || |  ||||||||| | ||||| ||| ||||||    
T  5624537 gaacttgtgaaagcaatcaaacaatccactctgtatcttgtggtgttctcggagaactacgcgtcatcaacatggtgtttgaacgaactcgttcaaataa 5624636  T
Q  205 tgaagtgtagaagaaaaagtg-----gacag-gttgttgttcttcctgtgttctaccgtattgatccttcacaggttcggaagcagactgggagttatgg 298  Q
    || ||||||  |  |||| ||     ||||  ||||||||| ||||||||||||||| | |||| |||||||| || ||||| ||||| || ||||||||    
T  5624637 tggagtgtaataacaaaaatgaagatgacaatgttgttgttattcctgtgttctaccatgttgacccttcacaagtgcggaaacagaccggaagttatgg 5624736  T
Q  299 cactgc 304  Q
    ||||||    
T  5624737 cactgc 5624742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 295
Target Start/End: Complemental strand, 12190502 - 12190381
Alignment:
Q  177 tggtgtttggatgaacttgttgaaataatgaagtgtagaagaaa--aagtggacag-gttgttgttcttcctgtgttctaccgtattgatccttcacagg 273  Q
    ||||||||| ||||||| ||||||||||||||||| | || |||  | |  ||||  ||||||||| ||||||||||||||||||| || |||||||| |    
T  12190502 tggtgtttgaatgaactcgttgaaataatgaagtgcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaaccttcacatg 12190403  T
Q  274 ttcggaagcagactgggagtta 295  Q
    | || |||||||| ||||||||    
T  12190402 tccgaaagcagacagggagtta 12190381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 295
Target Start/End: Complemental strand, 12434930 - 12434809
Alignment:
Q  177 tggtgtttggatgaacttgttgaaataatgaagtgtagaagaaa--aagtggacag-gttgttgttcttcctgtgttctaccgtattgatccttcacagg 273  Q
    ||||||||| ||||||| ||||||||||||||||| | || |||  | |  ||||  ||||||||| ||||||||||||||||||| || |||||||| |    
T  12434930 tggtgtttgaatgaactcgttgaaataatgaagtgcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaaccttcacatg 12434831  T
Q  274 ttcggaagcagactgggagtta 295  Q
    | || |||||||| ||||||||    
T  12434830 tccgaaagcagacagggagtta 12434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 5562348 - 5562449
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    ||||||||||| ||||||||  |||| ||| | ||||| || |||||||| ||||||||||||  ||| |  ||||||||| ||||||| ||| ||||||    
T  5562348 gaacttgtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcggagaactacgcgtcttcaacatggtgtttgaatgaactcgttcaaataa 5562447  T
Q  205 tg 206  Q
    ||    
T  5562448 tg 5562449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 5568929 - 5568974
Alignment:
Q  350 ttggaagaatgctctttctgaagctgctaatttatctggttttcat 395  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||||    
T  5568929 ttggaagaatgctctttttcaagctgctaatttgtctggttttcat 5568974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 14403502 - 14403547
Alignment:
Q  350 ttggaagaatgctctttctgaagctgctaatttatctggttttcat 395  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||||    
T  14403502 ttggaagaatgctctttttcaagctgctaatttgtctggttttcat 14403547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 395
Target Start/End: Original strand, 5562612 - 5562656
Alignment:
Q  351 tggaagaatgctctttctgaagctgctaatttatctggttttcat 395  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||    
T  5562612 tggaagaatgctctttttgaagcagctaatttatctggatttcat 5562656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 5572942 - 5573001
Alignment:
Q  259 ttgatccttcacaggttcggaagcagactgggagttatggcactgcgttggcaagacaca 318  Q
    |||| |||||||| || ||||||||||| |||||||| |||||||| ||||||| |||||    
T  5572942 ttgacccttcacacgtccggaagcagacggggagttacggcactgctttggcaaaacaca 5573001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 5598547 - 5598440
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| | ||||| ||| ||||||    
T  5598547 gaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataa 5598448  T
Q  205 tgaagtgt 212  Q
    || |||||    
T  5598447 tggagtgt 5598440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 5636728 - 5636835
Alignment:
Q  105 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa 204  Q
    |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| ||   ||| |  ||||||||| | ||||| ||| ||||||    
T  5636728 gaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataa 5636827  T
Q  205 tgaagtgt 212  Q
    || |||||    
T  5636828 tggagtgt 5636835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 32632788 - 32632875
Alignment:
Q  231 gttgttgttcttcctgtgttctaccgtattgatccttcacaggttcggaagcagactgggagttatggcactgcgttggcaagacaca 318  Q
    |||| |||| |||||||||| |||| |||||| || || |  || ||||| |||||||| ||||| |||||||||||||||| |||||    
T  32632788 gttgctgttattcctgtgttttaccatattgacccctcccgcgtgcggaaacagactggaagttacggcactgcgttggcaaaacaca 32632875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 295
Target Start/End: Complemental strand, 12178807 - 12178686
Alignment:
Q  177 tggtgtttggatgaacttgttgaaataatgaagtgtagaagaaa--aagtggacag-gttgttgttcttcctgtgttctaccgtattgatccttcacagg 273  Q
    ||||||||| ||||||| ||||||||||||||||| | || |||  | |  ||||  ||||||||| ||||||||||||||||||| ||  ||||||| |    
T  12178807 tggtgtttgaatgaactcgttgaaataatgaagtgcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaagcttcacatg 12178708  T
Q  274 ttcggaagcagactgggagtta 295  Q
    | || |||||||| || |||||    
T  12178707 tccgaaagcagacaggaagtta 12178686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 295
Target Start/End: Complemental strand, 12423235 - 12423114
Alignment:
Q  177 tggtgtttggatgaacttgttgaaataatgaagtgtagaagaaa--aagtggacag-gttgttgttcttcctgtgttctaccgtattgatccttcacagg 273  Q
    ||||||||| ||||||| ||||||||||||||||| | || |||  | |  ||||  ||||||||| ||||||||||||||||||| ||  ||||||| |    
T  12423235 tggtgtttgaatgaactcgttgaaataatgaagtgcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaagcttcacatg 12423136  T
Q  274 ttcggaagcagactgggagtta 295  Q
    | || |||||||| || |||||    
T  12423135 tccgaaagcagacaggaagtta 12423114  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 6313581 - 6313536
Alignment:
Q  350 ttggaagaatgctctttctgaagctgctaatttatctggttttcat 395  Q
    ||||||||||||||||| | |||| |||||||| ||||||||||||    
T  6313581 ttggaagaatgctctttttcaagcagctaatttgtctggttttcat 6313536  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 5562479 - 5562555
Alignment:
Q  242 tcctgtgttctaccgtattgatccttcacaggttcggaagcagactgggagttatggcactgcgttggcaagacaca 318  Q
    |||||||||||||| | |||| |||||  | |||||||| || || |||||||| ||||||||| |||||| |||||    
T  5562479 tcctgtgttctaccatgttgacccttctgatgttcggaaacacacagggagttacggcactgcgctggcaaaacaca 5562555  T

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