View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_54 (Length: 404)
Name: NF1404_low_54
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 34 - 393
Target Start/End: Complemental strand, 40069323 - 40068964
Alignment:
| Q |
34 |
tgacatgattaaactcgtgaatatagtacttacatttcgttttccatttagtcgacctagacgcgtgctaacatttacaatacgaccacctgccgcggac |
133 |
Q |
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| T |
40069323 |
tgacatgattaaactggtgtatatagtacttacatttcgttttccatttagtcgacctagacgcgtgcttacatttacaatacgaccaccagccgcggac |
40069224 |
T |
|
| Q |
134 |
gccttcattaatggaatcatagcttcaatcatacgtttggttccaaaataattcgtatcaataaccgtatgagcattttcaactgaattatcagacccaa |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40069223 |
gccttcattaatggaatcatagcttcaatcatacgtttggttccaaaataattcgtatcaataaccgtatgagcattttcaactgaattatcagacccaa |
40069124 |
T |
|
| Q |
234 |
aattgaaattaatccctgcattgtttacctgcaaatatatgatacattatttgcttagatacatatgcagacatttaatttaattcagttatcttgcaac |
333 |
Q |
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| T |
40069123 |
aattgaaattaatccctgcattgtttacctgcaaatatatgatacattatttgcttagatacatatgcagacatttaatttaattcagttatcttgcaac |
40069024 |
T |
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| Q |
334 |
tagattataagaaagaaagctagaaattaaccatatttgcttaataaacttgccagaata |
393 |
Q |
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| T |
40069023 |
tagattataagaaagaaagctagaaattaaccatatttgcttaataaacttgccagaata |
40068964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 265
Target Start/End: Complemental strand, 10898922 - 10898717
Alignment:
| Q |
60 |
tacttacatttcgttttccatttagtcgacctagacgcgtgctaacatttacaatacgaccacctgccgcggacgccttcattaatggaatcatagcttc |
159 |
Q |
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| T |
10898922 |
tacttacatttcgtcttccatttaatcgacctagacgcgagcttacgtttacaattcgagcaccaacaacagatggtttcatcattggaataagagcttc |
10898823 |
T |
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| Q |
160 |
aatcatacgtttggttccaaaataattcgtatcaataaccgtatgagcattttcaactgaattatcagacccaaaattgaaattaatccctgcattgttt |
259 |
Q |
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| T |
10898822 |
agtcaactttttgatgccataataatttgtttcaataaccttgcgagcattttcaacagagttatcagacccgagattgaaattaacaccagcattgttc |
10898723 |
T |
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| Q |
260 |
acctgc |
265 |
Q |
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|||||| |
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| T |
10898722 |
acctgc |
10898717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 228
Target Start/End: Complemental strand, 44966051 - 44965883
Alignment:
| Q |
60 |
tacttacatttcgttttccatttagtcgacctagacgcgtgctaacatttacaatacgaccacctgccgcggacgccttcattaatggaatcatagcttc |
159 |
Q |
| |
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|||| ||||||||||| || ||||| ||||| | ||| | || ||||| |||||||||||||| || || || | |||||| || |||||||||||||| |
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| T |
44966051 |
tactcacatttcgtttaccgtttagacgacccaaacgtgaactcacattaacaatacgaccaccggcagcagatggcttcatcaaaggaatcatagcttc |
44965952 |
T |
|
| Q |
160 |
aatcatacgtttggttccaaaataattcgtatcaataaccgtatgagcattttcaactgaattatcaga |
228 |
Q |
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|||||| | ||||| ||| ||||||| || |||||| || |||||||||||||||| |||||||| |
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| T |
44965951 |
aatcattctcttggtcccataataatttgtttcaatacatttacgagcattttcaactgagttatcaga |
44965883 |
T |
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