View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_56 (Length: 403)

Name: NF1404_low_56
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_56
NF1404_low_56
[»] chr8 (2 HSPs)
chr8 (82-274)||(2356591-2356786)
chr8 (309-353)||(2356878-2356922)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 82 - 274
Target Start/End: Original strand, 2356591 - 2356786
Alignment:
Q  82 ttaattttttcaattacgattacataggttaaattatgaatcatgagctataaactacgcaaattatcgcataaaa---tgttataagttagtgcaaatn 178  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||   ||||| ||||||||||||||     
T  2356591 ttaattttttcaactacgattacataggttaaattatgaatcgtgagctataaactacgtaaattatcgtataaaaaaatgttacaagttagtgcaaata 2356690  T
Q  179 nnnnnntgtttatgacttctattcggtgttatcaacttatcattttcctttcctataagatgcacatcgactgttttggaagtaaaaccaaacaca 274  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||    
T  2356691 aaaaaatgtttatgacttctattcggtgttatcaacttatcattttcctttcctataagatgcacatcgactgtttcgaaagtgaaaccaaacaca 2356786  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 2356878 - 2356922
Alignment:
Q  309 atcctttcaaaaattaattacttcatagatgtttctgatcaacat 353  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  2356878 atccttccaaaaattaattacttcatagatgtttctgatcaacat 2356922  T

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