View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_58 (Length: 400)
Name: NF1404_low_58
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 101 - 371
Target Start/End: Complemental strand, 42969458 - 42969188
Alignment:
| Q |
101 |
actctagcatgagaaatttggctgtacgagaattgctcttcctctgtttggtaggttattgttattagactacactttaggttattgttcaataagtcct |
200 |
Q |
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| T |
42969458 |
actctagcatgagaaatttggctgtacgagaattgatcttcttctgtttggtaggttattgttattagactacacattaggtttttgttcaataagtcct |
42969359 |
T |
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| Q |
201 |
ttaaatggctcaagtcgtaactctaaatcgacattttttgcgagtaaattattatctgtagagtttaatcgacaatcatctacacattaaggagtccaat |
300 |
Q |
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| T |
42969358 |
ttaaatggctcaagtcgtaactctaaatcgacattttttgcgagtaaattattatctgtagagtttaatcgacaatcatctacacattaaggagtccaat |
42969259 |
T |
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| Q |
301 |
ccaaccactatgaaacatgtaggctaatggaccacatctaagttaccagaaaccaacacagcagataccat |
371 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42969258 |
ccaaccactatggaacatgtaggctaatggaccacatctaagttaccagaaaccaacacagcagataccat |
42969188 |
T |
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