View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_6 (Length: 678)
Name: NF1404_low_6
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 200 - 668
Target Start/End: Complemental strand, 40596557 - 40596091
Alignment:
| Q |
200 |
atggaagtttccttaattttgtaccaagcaacaaaatacaatgaccaaattcatcaaggagtaattttgacttggaggatagcaaccagttgggaagtaa |
299 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |
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| T |
40596557 |
atggaagtttccttaattttgtaccaaacaacaaaatacaatgaccaaattcat-----agtaattttgacttggaggatagcaaccggttggtaagtaa |
40596463 |
T |
|
| Q |
300 |
accaactgtatatat---aaataacataatttatggatcagtgaattcacnnnnnnnnnaacatgttcctaggataaaatgtcacttgagaatgataata |
396 |
Q |
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| ||||||||||||| ||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||||||||| |||||| |
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| T |
40596462 |
atcaactgtatatattataaataacataacgtatggatcagtgaattaacttttttt---atatgttcctaggataaaatgtcacttgagaataataata |
40596366 |
T |
|
| Q |
397 |
taaatgtctaaaaaatgcgat---cccaacaacagataagaaatattatattcataccttggcaaccatgaatgaggtaaggatttcccctatatccatc |
493 |
Q |
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||||||||||||| | | | || | ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||| |
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| T |
40596365 |
taaatgtctaaaatttacttttggccaatcaagagataagaaatattatattcataccttggcagccatggttgaggtaaggattaccccaatatccatc |
40596266 |
T |
|
| Q |
494 |
aaagcatttgcaaaggtaaccagatttgtgggttgctgcatcgtaacatgtactgttgtttgccttacatgcataacttgaaagatcattcttagcttgc |
593 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||| |||||| |||||| |||| |||| |||||||||||||||| | |||||||| ||| ||||||| |
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| T |
40596265 |
cctgcatctgcagaggtaaccagatttgtgagttggtgcatcataacatttacttttgtctgccttacatgcataagtggaaagatccttccgagcttgc |
40596166 |
T |
|
| Q |
594 |
tggcacgtttggttccctactgcccagtccaacaacacaggaaagttcttcttctttagcttgtggaggtctgtg |
668 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
40596165 |
tggcacgtttggttccctactgcccagtccaacaacacaggaaagttcctcttctttagcttttggaggtctgtg |
40596091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 447 - 670
Target Start/End: Complemental strand, 40589905 - 40589679
Alignment:
| Q |
447 |
ataccttggcaaccatgaatgaggtaaggatttcccctatatccatcaaagcatttgcaaaggtaaccagatttgtgggttgctgcatcgtaacatgtac |
546 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |
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|
| T |
40589905 |
ataccttcgcaaccatgaatgaggtaaggatttcccctatatccatcaaagcatttgcaaaggtaaccagatttgatggtttctgcatcgtaacatatac |
40589806 |
T |
|
| Q |
547 |
tgttgtttgccttacatgcata---acttgaaagatcattcttagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaagttctt |
643 |
Q |
| |
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| ||| ||||||||| ||||| |||||||||||| |||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40589805 |
ttctgtctgccttacaagcatacttacttgaaagatccttctgagcttgctgacaggtttggtttcctactgcccagtccaacaacacaggaaagttctt |
40589706 |
T |
|
| Q |
644 |
cttctttagcttgtggaggtctgtggt |
670 |
Q |
| |
|
||||||||||||| ||||||||||||| |
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|
| T |
40589705 |
cttctttagcttggggaggtctgtggt |
40589679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 447 - 666
Target Start/End: Complemental strand, 40571625 - 40571406
Alignment:
| Q |
447 |
ataccttggcaaccatgaatgaggtaaggatttcccctatatccatcaaagcatttgcaaaggtaaccagatttgtgggttgctgcatcgtaacatgtac |
546 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| |||| ||| |||||||||||||| |
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|
| T |
40571625 |
ataccttcgcaaccattaatgaggtaaggatttccccgatatccaccaaagcatctgcaaaggtaaccagatttgttggttcctggatcgtaacatgtac |
40571526 |
T |
|
| Q |
547 |
tgttgtttgccttacatgcataacttgaaagatcattcttagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaagttcttctt |
646 |
Q |
| |
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| || | ||||||||||||||| | |||||| |||| ||||||| |||| |||||||| ||||||| ||||| ||||||||||||||| | ||| || |
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| T |
40571525 |
ttttctcggccttacatgcataattgaaaagattcttctgagcttgcaggcatgtttggtttcctactgtccagttcaacaacacaggaaactccttatt |
40571426 |
T |
|
| Q |
647 |
ctttagcttgtggaggtctg |
666 |
Q |
| |
|
||| | |||| ||||||||| |
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|
| T |
40571425 |
cttcaacttgaggaggtctg |
40571406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 447 - 637
Target Start/End: Complemental strand, 40600944 - 40600754
Alignment:
| Q |
447 |
ataccttggcaaccatgaatgaggtaaggatttcccctatatccatcaaagcatttgcaaaggtaaccagatttgtgggttgctgcatcgtaacatgtac |
546 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |||||||| | ||||| | ||||||||||||||| ||| |||| ||||||||||||||||| |
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| T |
40600944 |
ataccttggcaaccatgaacgagataaggatttccccgatatccatgagagcatctacaaaggtaaccagatctgtcagttgttgcatcgtaacatgtac |
40600845 |
T |
|
| Q |
547 |
tgttgtttgccttacatgcataacttgaaagatcattcttagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaa |
637 |
Q |
| |
|
| |||| |||||||| |||||| | |||||||| |||| |||||| || || |||||||||||||||||||||||||||||||||||||| |
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| T |
40600844 |
ttttgtcggccttacacgcataagtggaaagatccttctgagcttgatgacaagtttggttccctactgcccagtccaacaacacaggaaa |
40600754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 448 - 669
Target Start/End: Complemental strand, 40566925 - 40566707
Alignment:
| Q |
448 |
taccttggcaaccatgaatgaggtaaggatttcccctatatccatcaaagcatttgcaaaggtaaccagatttgtgggttgctgcatcgtaacatgtact |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| | ||| | |||||||| |||||| | | || ||| || |||||||||||| |
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| T |
40566925 |
taccttggcaaccatgaatgaggtaaggatttccccgatatccatgcacacatctacaaaggtagccagatctctcgg---ctgaattgtaacatgtact |
40566829 |
T |
|
| Q |
548 |
gttgtttgccttacatgcataacttgaaagatcattcttagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaagttcttcttc |
647 |
Q |
| |
|
||| | ||||||||||||||| | ||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||| |
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|
| T |
40566828 |
tttgctggccttacatgcataattggaaagatcattctgagcatgctggcatgtttggttccctactgcccagtcgaacaacacaggaaactccttcttc |
40566729 |
T |
|
| Q |
648 |
tttagcttgtggaggtctgtgg |
669 |
Q |
| |
|
|||| || |||||||||||| |
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|
| T |
40566728 |
tttaactcaaggaggtctgtgg |
40566707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 447 - 647
Target Start/End: Complemental strand, 40578048 - 40577848
Alignment:
| Q |
447 |
ataccttggcaaccatgaatgaggtaaggatttcccctatatccatcaaagcatttgcaaaggtaaccagatttgtgggttgctgcatcgtaacatgtac |
546 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||| |||| ||| ||||||||||||| |
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|
| T |
40578048 |
ataccttggcaaccattaatgaggtaaggatttccccgatatccatgagagcatctgcaaaggtaaccagatttgttggttcctgtttcgtaacatgtac |
40577949 |
T |
|
| Q |
547 |
tgttgtttgccttacatgcataacttgaaagatcattcttagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaagttcttctt |
646 |
Q |
| |
|
| || | |||||||| |||||| | ||| ||| |||| ||||||| |||| ||||| || |||||| ||||||||||||||||||||| | |||||| |
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|
| T |
40577948 |
ttttaatggccttacaagcataattggaatgattcttctgagcttgcaggcatgtttgatttcctactttccagtccaacaacacaggaaactccttctt |
40577849 |
T |
|
| Q |
647 |
c |
647 |
Q |
| |
|
| |
|
|
| T |
40577848 |
c |
40577848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 40578623 - 40578558
Alignment:
| Q |
91 |
tcatcaacatctaaagtatattttgtcagtttcgatctttgttttcaaaatggacaatggagctttc |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||| | ||| ||||||||| |||| |
|
|
| T |
40578623 |
tcatcaacatctaaagtatattttgtcagtttcg-tttttgtttttacaatatacaatggagttttc |
40578558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 40596760 - 40596714
Alignment:
| Q |
91 |
tcatcaacatctaaagtatattttgtcagtttcgatctttgttttca |
137 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
40596760 |
tcatcaacatctaaagtgtattttgtcaggttcggtctttgttttca |
40596714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 447 - 669
Target Start/End: Original strand, 2016748 - 2016967
Alignment:
| Q |
447 |
ataccttggcaaccatgaatgaggtaaggatttcccctatatccatcaaagcatttgcaaaggtaaccagatttgtgggttgctgcatcgtaacatgtac |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| | | || || ||||||||||| |
|
|
| T |
2016748 |
ataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcaggtgg---attgtaacatgtac |
2016844 |
T |
|
| Q |
547 |
tgttgtttgccttacatgcataacttgaaagatcattcttagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaagttcttctt |
646 |
Q |
| |
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| ||||| ||||||| |||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
2016845 |
ttttgttgtccttacaggcataatttgcaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaattccttctt |
2016944 |
T |
|
| Q |
647 |
ctttagcttgtggaggtctgtgg |
669 |
Q |
| |
|
|| | |||| ||||||| |||| |
|
|
| T |
2016945 |
ctccaacttgaggaggtccgtgg |
2016967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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