View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_60 (Length: 395)
Name: NF1404_low_60
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 106 - 380
Target Start/End: Original strand, 25139030 - 25139304
Alignment:
| Q |
106 |
tttgcttattgtgtgtgattgtggtctcaatgtagaagttaaagaagatacatgtgctagcttgtgggggtagaatttgtgtaatttgaattcttaagct |
205 |
Q |
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| T |
25139030 |
tttgcttattgtgtgcgattgtggtctcaatgtagatgttaaagatgatacatgtgctagcttgtgggggtagaatttgtgtaatttgaattcttaagct |
25139129 |
T |
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| Q |
206 |
agccaacaatgtctttgatgaatagatatagatttccaagagagggatgattttgatgcttttgatgtttgttgggtcctaaagtgcacatgtgtaggtg |
305 |
Q |
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| T |
25139130 |
agccaacaatgtctttgatgaatagatatagatttccaagagatggatgattttgatgcttttgatgtttgttgggtcgtaaagtgcacatgtgtaggtg |
25139229 |
T |
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| Q |
306 |
tgttgtgttaagaatcagatagattgaaaagctcatctccctcaaaacatgttcaattggaacatcttgtgtcat |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25139230 |
tgttgtgttaagaatcagatagattgaaaagctcatctccctcaaaacatgttcaattggaacatcttgtgtcat |
25139304 |
T |
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