View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_62 (Length: 394)
Name: NF1404_low_62
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 338
Target Start/End: Complemental strand, 32431467 - 32431227
Alignment:
| Q |
103 |
tttttgatgcatttattcaatccaacatcatgatcactatgttactttgtaataacatttcnnnnnnnnnnnnnnn--tcaacaaatatctaaatgataa |
200 |
Q |
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| T |
32431467 |
tttttgatgtatttattcaatccaacatcatgatcactatgttactttgtaataacatttctttaaaaaaaaaaaaaatcaacaaatatctaaatgataa |
32431368 |
T |
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| Q |
201 |
tacataattcaatgactaaataaaagaattatattctcacatatnnnnnnntatttgtcaatctataatctttaaac-nnnnnnnnnnggctcaaatctt |
299 |
Q |
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| T |
32431367 |
tacatgattcaatgactaaataaaagaattatattctcacatataaaaaaatatttgtcaatctataatctttaaactttttttttttggctcaaatctt |
32431268 |
T |
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| Q |
300 |
taaactc--aatttatatatttagctaggaaacaatgcaaa |
338 |
Q |
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||||||| | ||||||||||||||||||| || ||||||| |
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| T |
32431267 |
taaactcttactttatatatttagctaggacacgatgcaaa |
32431227 |
T |
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