View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_63 (Length: 392)
Name: NF1404_low_63
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 94 - 382
Target Start/End: Original strand, 35429591 - 35429879
Alignment:
| Q |
94 |
aaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagt |
193 |
Q |
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| T |
35429591 |
aaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagt |
35429690 |
T |
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| Q |
194 |
tgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattg |
293 |
Q |
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| T |
35429691 |
tgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattg |
35429790 |
T |
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| Q |
294 |
aagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtg |
382 |
Q |
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| T |
35429791 |
aagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtg |
35429879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 95 - 382
Target Start/End: Original strand, 35420453 - 35420740
Alignment:
| Q |
95 |
aatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagtt |
194 |
Q |
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| T |
35420453 |
aatgttcaatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgcccagtt |
35420552 |
T |
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| Q |
195 |
gatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattga |
294 |
Q |
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| T |
35420553 |
gatctatggatgcatcaatcgttcaactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattga |
35420652 |
T |
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| Q |
295 |
agtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtg |
382 |
Q |
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| T |
35420653 |
agtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtg |
35420740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 35423499 - 35423604
Alignment:
| Q |
142 |
ctctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgt |
241 |
Q |
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| T |
35423499 |
ctctttcatacaaaatgctctcatgtttttcatgaagagtgtattagcaagtggattgatcgatgcatcgatcgctcatcttcttattcttgcccattgt |
35423598 |
T |
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| Q |
242 |
gtcgac |
247 |
Q |
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| T |
35423599 |
gtcgac |
35423604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 42974032 - 42974125
Alignment:
| Q |
94 |
aaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattg |
187 |
Q |
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| T |
42974032 |
aaatgttcgatttgtttggaggagttttgtaaaggatcgcattcagaactctactatagaaaatgttcgcatgttttccataaagagtgtattg |
42974125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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