View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_low_78 (Length: 380)

Name: NF1404_low_78
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_low_78
NF1404_low_78
[»] chr2 (22 HSPs)
chr2 (34-229)||(10347399-10347596)
chr2 (253-335)||(10347055-10347137)
chr2 (32-213)||(10371480-10371671)
chr2 (35-138)||(10335585-10335690)
chr2 (253-333)||(10351509-10351590)
chr2 (169-228)||(10352737-10352795)
chr2 (274-335)||(10371180-10371242)
chr2 (34-84)||(10341134-10341184)
chr2 (34-169)||(9315713-9315854)
chr2 (34-78)||(7115976-7116020)
chr2 (253-328)||(9287943-9288019)
chr2 (291-335)||(10335075-10335119)
chr2 (169-228)||(9066078-9066136)
chr2 (169-228)||(10335433-10335491)
chr2 (169-228)||(11987932-11987990)
chr2 (169-228)||(12012994-12013052)
chr2 (34-87)||(8573833-8573886)
chr2 (171-228)||(9291565-9291621)
chr2 (291-328)||(9295444-9295481)
chr2 (101-138)||(10352823-10352860)
chr2 (253-328)||(8574213-8574289)
chr2 (34-78)||(9274291-9274335)
[»] chr8 (2 HSPs)
chr8 (253-335)||(41968146-41968229)
chr8 (171-228)||(41967181-41967237)
[»] chr4 (2 HSPs)
chr4 (169-226)||(26574525-26574581)
chr4 (106-138)||(26574609-26574641)
[»] chr1 (1 HSPs)
chr1 (56-166)||(29443635-29443748)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 34 - 229
Target Start/End: Complemental strand, 10347596 - 10347399
Alignment:
Q  34 ccctgttgataatcgtaggaaaaaggagaatcatccaagcaagagaaggtactttttattgtttaactg--tttttgttgtgtataagttatatcagttc 131  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  10347596 ccctgttgataatcgtaggaagaaggagaatcatccaagcaagagaaggtacttcttattgtttaactgagtttttgttgtgtataagttatatcagttc 10347497  T
Q  132 aatggacttatcatatcatatacgcagttaaactctatcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttaccttg 229  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10347496 aatggacttatcatatcatatatgcagttaaactctatcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttaccttg 10347399  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 10347137 - 10347055
Alignment:
Q  253 taaagagaggaaagttgttgtttagaaattggctactgtgaaattactccaaatttatgcacagttcctttcaaaaacatggt 335  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  10347137 taaagagaggaaagttgttgtttagaaattggctactgggaaattactccaaatttatgcatagttcctttcaaaaacatggt 10347055  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 10371671 - 10371480
Alignment:
Q  32 taccctgttgataatcgtaggaaaaaggagaatcatccaagcaagagaaggtactttttattgtttaact--gtttttgttgtgtataagtt-atatcag 128  Q
    |||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||| || |  |||||||  |||||||||||||||||||| |||||||    
T  10371671 taccttgttgataatggtaggaagaaggagaatcatacaagcaagagaaggtacttattgt--tttaactgagtttttgttgtgtataagttaatatcag 10371574  T
Q  129 ttcaatggacttatcatatcatatacgcagttaaactct---------atcaaattgaattcttatcataggatagagtattttctaattactt 213  Q
    |||||||||   ||||||| ||||| |||||||||||||          ||||||||||||||||||||||| || || |||||||||||||||    
T  10371573 ttcaatggatccatcatattatatatgcagttaaactctgtgttaaaggtcaaattgaattcttatcatagggtaaaggattttctaattactt 10371480  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 10335690 - 10335585
Alignment:
Q  35 cctgttgataatcgtaggaaaaaggagaatcatccaagcaagagaaggtactttttattgtttaact--gtttttgttgtgtataagttatatcagttca 132  Q
    |||||||||||||||||||| ||| |||||| | |||||||| |||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||    
T  10335690 cctgttgataatcgtaggaagaagcagaatcgtacaagcaagggaaggtacttcttattgtttgactgagtttttgttgtgtataagttatatcagttca 10335591  T
Q  133 atggac 138  Q
    ||||||    
T  10335590 atggac 10335585  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 10351590 - 10351509
Alignment:
Q  253 taaagagaggaaagttgttgtttagaaattggc-tactgtgaaattactccaaatttatgcacagttcctttcaaaaacatg 333  Q
    ||||||||||||||||||||||||||  ||||| |||  ||||| ||||||||||||||||| |||||||||||||| ||||    
T  10351590 taaagagaggaaagttgttgtttagattttggcctaccatgaaagtactccaaatttatgcatagttcctttcaaaagcatg 10351509  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 10352795 - 10352737
Alignment:
Q  169 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 228  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||| |||||||||||    
T  10352795 tcaaattgaattcttatcataggata-aggattctctaattactttgacgtctttacctt 10352737  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 10371242 - 10371180
Alignment:
Q  274 ttagaaattggc-tactgtgaaattactccaaatttatgcacagttcctttcaaaaacatggt 335  Q
    |||||||||||| |||  ||||||||||||||||||||||| |||||||||||||| ||||||    
T  10371242 ttagaaattggcctaccatgaaattactccaaatttatgcatagttcctttcaaaagcatggt 10371180  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 10341184 - 10341134
Alignment:
Q  34 ccctgttgataatcgtaggaaaaaggagaatcatccaagcaagagaaggta 84  Q
    ||||||||| ||||||||||| |||||||||| | ||||||||||||||||    
T  10341184 ccctgttgacaatcgtaggaagaaggagaatccttcaagcaagagaaggta 10341134  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 9315854 - 9315713
Alignment:
Q  34 ccctgttgataatcgtaggaaaaaggagaatcatccaagcaaga------gaaggtactttt-tattgtttaactgtttttgttgtgtataagtta-tat 125  Q
    |||||||||| || ||||||| |||||||||||| |||||||||      |||||||||| | |||| ||| |  ||||||| | ||||||||||| | |    
T  9315854 ccctgttgattattgtaggaagaaggagaatcatacaagcaagaacaagagaaggtacttatatattatttga--gtttttgctatgtataagttaatgt 9315757  T
Q  126 cagttcaatggacttatcatatcatatacgcagttaaactctat 169  Q
    |||||||||||||  ||||||| ||||| | |||||||||||||    
T  9315756 cagttcaatggacccatcatatgatataagtagttaaactctat 9315713  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 7115976 - 7116020
Alignment:
Q  34 ccctgttgataatcgtaggaaaaaggagaatcatccaagcaagag 78  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||    
T  7115976 ccctgttgataattgtaggaagaaggagaatcatacaagcaagag 7116020  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 9288019 - 9287943
Alignment:
Q  253 taaagagaggaaagttgttgtttagaaattggc-tactgtgaaattactccaaatttatgcacagttcctttcaaaa 328  Q
    |||||||| |||||| |||| | | |||||||| |||  ||||||||||||||||||||||| |||||||| |||||    
T  9288019 taaagagaagaaagtagttgctgaaaaattggcctaccatgaaattactccaaatttatgcatagttccttgcaaaa 9287943  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 10335119 - 10335075
Alignment:
Q  291 tgaaattactccaaatttatgcacagttcctttcaaaaacatggt 335  Q
    |||||||||||||||||| | || |||||||||||||||||||||    
T  10335119 tgaaattactccaaatttgtacatagttcctttcaaaaacatggt 10335075  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 9066078 - 9066136
Alignment:
Q  169 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 228  Q
    |||||||||| ||||||||||||||| || ||| ||||||||||||||||| | ||||||    
T  9066078 tcaaattgaagtcttatcataggataaag-attctctaattactttgaagtttctacctt 9066136  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 10335491 - 10335433
Alignment:
Q  169 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 228  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||| || |||| |||||||    
T  10335491 tcaaattgaattcttatcataggat-gaggattctctaattactctggagtcgttacctt 10335433  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 11987932 - 11987990
Alignment:
Q  169 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 228  Q
    ||||||||||||| ||| |||||| | || ||||||||||||||||||||||| ||||||    
T  11987932 tcaaattgaattcctattataggaca-aggattttctaattactttgaagtctctacctt 11987990  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 12012994 - 12013052
Alignment:
Q  169 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 228  Q
    ||||||||||||||||| |||||| | || ||| ||||||||||||||||||| ||||||    
T  12012994 tcaaattgaattcttattataggaca-aggattctctaattactttgaagtctctacctt 12013052  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 8573833 - 8573886
Alignment:
Q  34 ccctgttgataatcgtaggaaaaaggagaatcatccaagcaagagaaggtactt 87  Q
    ||||||||||||| |||||||  ||||||||  | |||||||||||||||||||    
T  8573833 ccctgttgataattgtaggaaggaggagaattgtacaagcaagagaaggtactt 8573886  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 9291621 - 9291565
Alignment:
Q  171 aaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 228  Q
    ||||||||||||||| |||||| | || ||| ||||||||||||||||||| ||||||    
T  9291621 aaattgaattcttattataggaca-aggattctctaattactttgaagtctctacctt 9291565  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 9295444 - 9295481
Alignment:
Q  291 tgaaattactccaaatttatgcacagttcctttcaaaa 328  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  9295444 tgaaattactccaaatttaggcatagttcctttcaaaa 9295481  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 10352860 - 10352823
Alignment:
Q  101 tgtttttgttgtgtataagttatatcagttcaatggac 138  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  10352860 tgttgttgttgtgtataagttatatcagttcgatggac 10352823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 8574213 - 8574289
Alignment:
Q  253 taaagagaggaaagttgttgtttagaaattggc-tactgtgaaattactccaaatttatgcacagttcctttcaaaa 328  Q
    |||||||  |||| ||||| | ||||||||||| |||  ||||||||||| ||||||||||| |||||| |||||||    
T  8574213 taaagaggagaaaattgttatatagaaattggcctaccatgaaattactctaaatttatgcatagttccattcaaaa 8574289  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 9274335 - 9274291
Alignment:
Q  34 ccctgttgataatcgtaggaaaaaggagaatcatccaagcaagag 78  Q
    |||||||||||||  |||||| |||||||||||| ||||||||||    
T  9274335 ccctgttgataattctaggaagaaggagaatcatacaagcaagag 9274291  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 41968146 - 41968229
Alignment:
Q  253 taaagagaggaaagttgttgtttagaaattgg-ctactgtgaaattactccaaatttatgcacagttcctttcaaaaacatggt 335  Q
    |||||||| ||||||||||||||||||||||| ||||  |||||||||||| |||||||||| ||||||||||| || ||||||    
T  41968146 taaagagaagaaagttgttgtttagaaattggcctaccatgaaattactcctaatttatgcatagttcctttcagaagcatggt 41968229  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 41967181 - 41967237
Alignment:
Q  171 aaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 228  Q
    ||||||||||||||| |||||||| | |||| ||||||||||| |||| |||||||||    
T  41967181 aaattgaattcttattataggata-actattctctaattacttcgaaggctttacctt 41967237  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 26574581 - 26574525
Alignment:
Q  169 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacc 226  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||| |||||||||    
T  26574581 tcaaattgaattcttatcataggata-aggattctctaattactttgacgtctttacc 26574525  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 26574641 - 26574609
Alignment:
Q  106 ttgttgtgtataagttatatcagttcaatggac 138  Q
    |||||||||||||||||||||||||||||||||    
T  26574641 ttgttgtgtataagttatatcagttcaatggac 26574609  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 29443635 - 29443748
Alignment:
Q  56 aaggagaatcatccaagcaagagaaggtactttttattgtttaact--gtttttgttgtgtataagtt-atatcagttcaatggacttatcatatcatat 152  Q
    |||||||||||  ||||||||||||||||||| |||||| ||| ||  ||||||  | |||||||||| |||||| ||||||||||  ||||||| ||||    
T  29443635 aaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatat 29443734  T
Q  153 acgcagttaaactc 166  Q
    |   ||||||||||    
T  29443735 atctagttaaactc 29443748  T

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